PRDM11

General Information

Gene Name       : PRDM11
Gene ID             : ENSG00000019485.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PRDM11)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878PRDM11ENSG00000019485.130.130.440.29ENCSR000AEF
HepG2PRDM11ENSG00000019485.134.692.313.50ENCSR985KAT
K562PRDM11ENSG00000019485.130.410.500.45ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PRDM11 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PRDM11 RNA is bound by 2 proteins.  







eCLIP assay for PRDM11 is not avaliable on ENCORE database.





2 proteins are bound to PRDM11 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr114517106145171142+intron-Distal4.006983.16028HepG2SUGP2
chr114523091945231012+intron-Distal,intron-Proximal4.432154.59452HepG2PCBP2
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PRDM11 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PRDM11 is not available on ENCORE database.

  • 41 RBPs can affect the levels of PRDM11.  








The Knockdown/knockout RNA-Seq assay for PRDM11 is not available on ENCORE database.





41 RBPs can affect the gene expression of PRDM11 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PRDM11ENSG00000019485.8135.5106061.743701.133903.837103.22540HepG2AKAP1
PRDM11ENSG00000019485.8119.8370059.867101.001104.295503.50100HepG2CKAP4
PRDM11ENSG00000019485.878.4922034.217101.197703.091501.85080HepG2EIF2S2
PRDM11ENSG00000019485.8118.9732052.555301.178603.657102.87210HepG2EIF4B
PRDM11ENSG00000019485.876.5305041.300600.889802.447001.87490HepG2HNRNPU
PRDM11ENSG00000019485.8115.9021054.500401.088503.711402.95160HepG2MAGOH
PRDM11ENSG00000019485.8109.5036054.796300.998702.872602.23020HepG2MATR3
PRDM11ENSG00000019485.8128.5029041.153801.642606.348205.49450HepG2PUF60
PRDM11ENSG00000019485.8119.3792043.676501.450506.966806.11430HepG2PUM1
PRDM11ENSG00000019485.872.1187035.731401.013102.339101.43570HepG2RBM27
PRDM11ENSG00000019485.876.7155042.889100.838802.198201.61410HepG2SMN1
PRDM11ENSG00000019485.8107.8420056.572500.930602.434801.70340HepG2SNRNP70
PRDM11ENSG00000019485.8112.3716051.528301.124704.168403.61700HepG2SRSF1
PRDM11ENSG00000019485.885.5284040.621401.074103.016202.36540HepG2SRSF5
PRDM11ENSG00000019485.895.4547046.207901.046602.145001.58440HepG2SUCLG1
PRDM11ENSG00000019485.879.2977040.125500.982702.716702.22000HepG2TIAL1
PRDM11ENSG00000019485.8187.6240038.967702.267405.939705.03620HepG2U2AF1
PRDM11ENSG00000019485.8101.9355030.822601.725503.531902.41210HepG2U2AF2
PRDM11ENSG00000019485.842.0363012.698201.726903.227401.89210K562ABCF1
PRDM11ENSG00000019485.868.8207011.154602.625107.718606.81950K562AQR
PRDM11ENSG00000019485.849.4526017.329201.512702.986201.97340K562CELF1
PRDM11ENSG00000019485.8100.5706013.159602.9339015.6205014.18730K562DDX47
PRDM11ENSG00000019485.848.9808010.705702.193704.942503.70570K562EFTUD2
PRDM11ENSG00000019485.835.877804.128403.119303.874702.66100K562EIF3A
PRDM11ENSG00000019485.821.785304.238802.361502.718201.92790K562EIF3G
PRDM11ENSG00000019485.854.2420014.098201.943805.188403.92090K562EIF4G2
PRDM11ENSG00000019485.835.134704.568002.943204.457803.45620K562GPKOW
PRDM11ENSG00000019485.8102.8906020.709902.312607.281206.04260K562GRSF1
PRDM11ENSG00000019485.875.378708.303003.1824013.1954011.13250K562HNRNPA1
PRDM11ENSG00000019485.837.271006.454402.529604.350203.61850K562HNRNPC
PRDM11ENSG00000019485.835.797309.191501.961403.591802.57440K562HNRNPU
PRDM11ENSG00000019485.817.504604.155602.074502.197901.38460K562MATR3
PRDM11ENSG00000019485.823.933904.459602.424002.911602.01110K562METAP2
PRDM11ENSG00000019485.823.260606.538601.830702.126501.41190K562MTPAP
PRDM11ENSG00000019485.8173.3030025.533502.7627018.3795016.30890K562PCBP3
PRDM11ENSG00000019485.8141.0203019.579902.8484010.732909.20020K562POLR2G
PRDM11ENSG00000019485.891.7762010.418003.1389011.8736010.31060K562PRPF8
PRDM11ENSG00000019485.890.7420010.608203.0965011.7216010.01380K562RPS19
PRDM11ENSG00000019485.834.057404.350702.968504.697903.40830K562SF3B1
PRDM11ENSG00000019485.817.589403.961002.150702.039401.42160K562SRSF1
PRDM11ENSG00000019485.841.9597013.422101.644303.202201.59360K562SUCLG1
PRDM11ENSG00000019485.831.2948010.080301.634302.210801.30870K562SUPV3L1
PRDM11ENSG00000019485.825.405706.854501.889902.636701.80980K562WDR43
PRDM11ENSG00000019485.837.8678013.220801.518102.745401.46220K562WRN
PRDM11ENSG00000019485.857.9429012.563802.205306.686505.25440K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PRDM11 is not available on ENCORE database.






No RBPs affect the alternative splcing events of PRDM11 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for PRDM11 is not avaliable on ENCORE database.