PP13439

General Information

Gene Name       : PP13439
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: PP13439)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for PP13439 is not avaliable on ENCORE database.



Proteins bound to RNA
  • PP13439 RNA is bound by 7 proteins.  







eCLIP assay for PP13439 is not avaliable on ENCORE database.





7 proteins are bound to PP13439 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr3171527535171527675-5'-UTR,intron-Distal4.228154.48497K562NONO
chr3171527324171527356-5'-UTR,intron-Distal3.515103.50045HepG2SFPQ
chr3171523777171523789-intron-Distal5.013885.29407HepG2XRCC6
chr3171523728171523777-intron-Distal5.697758.64604HepG2XRCC6
chr3171520877171520918-intron-Distal5.090529.48778HepG2SUGP2
chr3171513984171514093-intron-Distal3.347608.44070HepG2HNRNPL
chr3171513405171513455-intron-Distal3.310923.54763HepG2TAF15
chr3171527733171527853-intron-Distal,intron-Proximal3.304146.30433HepG2FUS
chr3171520679171520783-intron-Distal3.3204013.42137HepG2SUGP2
chr3171513865171513984-intron-Distal4.5197310.23306HepG2HNRNPL
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for PP13439 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for PP13439 is not available on ENCORE database.

  • 32 RBPs can affect the levels of PP13439.  








The Knockdown/knockout RNA-Seq assay for PP13439 is not available on ENCORE database.





32 RBPs can affect the gene expression of PP13439 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
PP13439ENSG00000183657.211.5718037.06220-1.679302.538501.63490HepG2ABCF1
PP13439ENSG00000183657.222.9062052.25060-1.189702.773602.16520HepG2ACO1
PP13439ENSG00000183657.215.9907052.24810-1.708104.507103.69740HepG2CKAP4
PP13439ENSG00000183657.28.4241048.32840-2.520307.506806.24640HepG2DDX19B
PP13439ENSG00000183657.28.6568049.99200-2.529806.484905.53030HepG2DKC1
PP13439ENSG00000183657.243.7027014.517801.589802.910702.30300HepG2EIF2S1
PP13439ENSG00000183657.223.7518051.06600-1.104302.266201.51050HepG2EWSR1
PP13439ENSG00000183657.225.265206.775601.898602.387301.65580HepG2FUBP3
PP13439ENSG00000183657.246.9932015.920201.561503.057502.12110HepG2G3BP2
PP13439ENSG00000183657.213.3472040.24640-1.592302.347301.41200HepG2GNB2L1
PP13439ENSG00000183657.215.0210040.82450-1.442502.287101.70200HepG2GPKOW
PP13439ENSG00000183657.224.1067049.88970-1.049302.271101.37930HepG2HDGF
PP13439ENSG00000183657.27.7714028.40100-1.869702.348301.74890HepG2HNRNPA1
PP13439ENSG00000183657.259.4889015.169201.971404.885603.97790HepG2HNRNPK
PP13439ENSG00000183657.218.0123047.76910-1.407103.226902.12840HepG2KIF1C
PP13439ENSG00000183657.238.9474013.187901.562203.066202.43250HepG2PCBP1
PP13439ENSG00000183657.210.6935040.40630-1.917803.674102.28060HepG2PRPF6
PP13439ENSG00000183657.235.8519013.423601.417202.370801.85790HepG2PTBP1
PP13439ENSG00000183657.211.2096034.68320-1.629502.387001.82730HepG2PUF60
PP13439ENSG00000183657.225.9440053.22190-1.036602.295201.72120HepG2PUS1
PP13439ENSG00000183657.211.8618043.82970-1.885603.460202.56540HepG2RPS2
PP13439ENSG00000183657.213.1300056.10900-2.095405.571204.43000HepG2RPS3A
PP13439ENSG00000183657.219.8125052.46500-1.404903.538802.77250HepG2SF3A3
PP13439ENSG00000183657.238.0352013.967701.445102.471201.90790HepG2SF3B4
PP13439ENSG00000183657.231.3797011.866501.402802.343701.82750HepG2SRSF9
PP13439ENSG00000183657.212.6945034.35820-1.436501.945901.49650HepG2SSB
PP13439ENSG00000183657.213.1894039.40330-1.578902.522501.49930HepG2TBRG4
PP13439ENSG00000183657.237.6313012.042601.643703.276702.37140HepG2TIA1
PP13439ENSG00000183657.28.0100030.48840-1.928403.145702.61820HepG2TIAL1
PP13439ENSG00000183657.219.0584050.25860-1.398903.107401.93870HepG2XPO5
PP13439ENSG00000183657.27.8666026.64450-1.760002.421401.78710HepG2ZC3H8
PP13439ENSG00000183657.212.2921029.74630-1.275001.903001.33340K562PTBP1
PP13439ENSG00000183657.27.3728029.15660-1.983502.833302.11890K562SRSF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for PP13439 is not available on ENCORE database.






No RBPs affect the alternative splcing events of PP13439 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for PP13439 is not avaliable on ENCORE database.