MAGEC2

General Information

Gene Name       : MAGEC2
Gene ID             : ENSG00000046774.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: MAGEC2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878MAGEC2ENSG00000046774.90.000.000.00ENCSR000AEF
HepG2MAGEC2ENSG00000046774.90.000.000.00ENCSR985KAT
K562MAGEC2ENSG00000046774.952.1957.7754.98ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for MAGEC2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • MAGEC2 RNA is bound by 12 proteins.  







eCLIP assay for MAGEC2 is not avaliable on ENCORE database.





12 proteins are bound to MAGEC2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chrX141290416141290446-3'-UTR,intron-Distal4.463536.24350K562PABPC4
chrX141290438141290487-3'-UTR,intron-Distal4.602655.20806K562TIA1
chrX141290270141290292-3'-UTR,intron-Distal3.467423.56007K562DDX6
chrX141290288141290305-3'-UTR,intron-Distal3.117053.70419K562KHDRBS1
chrX141290547141290637-3'-UTR,intron-Distal4.4712848.11515K562PABPC4
chrX141290319141290357-3'-UTR,intron-Distal4.056563.66655K562YBX3
chrX141290518141290643-3'-UTR,intron-Distal3.1330827.69953K562DDX6
chrX141290416141290493-3'-UTR,intron-Distal6.001969.21129HepG2SUB1
chrX141290552141290630-3'-UTR,intron-Distal3.619245.95517K562APOBEC3C
chrX141290507141290547-3'-UTR,intron-Distal4.7863515.98596K562PABPC4
chrX141290446141290492-3'-UTR,intron-Distal4.0367110.31453K562PABPC4
chrX141290551141290630-3'-UTR,intron-Distal3.8432218.53408HepG2SUB1
chrX141292919141293030-5'-UTR,intron-Distal3.118574.20368K562DROSHA
chrX141292925141293005-5'-UTR,intron-Distal3.2008511.59203K562DDX3X
chrX141292948141292992-5'-UTR,intron-Distal4.9759510.92374K562RPS3
chrX141292885141292925-5'-UTR,intron-Distal3.354737.50590K562DDX3X
chrX141291561141291621-CDS,intron-Distal5.461235.82558K562PCBP1
chrX141291021141291073-CDS,intron-Distal3.090124.52956K562YBX3
chrX141291541141291600-CDS,intron-Distal4.293743.25872K562IGF2BP1
chrX141291589141291622-CDS,intron-Distal3.425579.05478K562TIA1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for MAGEC2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for MAGEC2 is not available on ENCORE database.

  • 30 RBPs can affect the levels of MAGEC2.  








The Knockdown/knockout RNA-Seq assay for MAGEC2 is not available on ENCORE database.





30 RBPs can affect the gene expression of MAGEC2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
MAGEC2ENSG00000046774.92305.821801631.417800.4991010.365809.35810K562AGGF1
MAGEC2ENSG00000046774.92656.697401697.554100.646109.782408.45880K562AKAP8L
MAGEC2ENSG00000046774.94466.568202489.543000.8432014.7139013.50960K562AQR
MAGEC2ENSG00000046774.92100.621301781.123800.237902.328701.49760K562ATP5C1
MAGEC2ENSG00000046774.92649.649501804.806000.553903.191802.03870K562CNOT7
MAGEC2ENSG00000046774.92304.079101903.073600.275803.321502.10060K562CPEB4
MAGEC2ENSG00000046774.9814.537301178.39330-0.532806.298304.61020K562CSTF2
MAGEC2ENSG00000046774.9517.26040845.38300-0.708704.210101.90440K562DDX1
MAGEC2ENSG00000046774.93155.858702726.493900.210902.154401.32000K562EIF4G2
MAGEC2ENSG00000046774.91919.667301484.926400.370403.374102.42980K562FIP1L1
MAGEC2ENSG00000046774.91550.422301268.527900.289402.170201.46490K562GPKOW
MAGEC2ENSG00000046774.93584.459502364.134300.600309.892308.43920K562GRSF1
MAGEC2ENSG00000046774.92157.210101685.398700.356002.727001.50570K562HNRNPK
MAGEC2ENSG00000046774.92199.103601779.719400.305202.820001.75160K562HNRNPL
MAGEC2ENSG00000046774.92473.492201801.564500.457205.155603.95920K562KIF1C
MAGEC2ENSG00000046774.91476.624501147.170100.364103.058601.58650K562LARP7
MAGEC2ENSG00000046774.91468.525301773.48420-0.272202.154301.40780K562MAGOH
MAGEC2ENSG00000046774.92002.232701424.835900.490709.726508.30910K562MTPAP
MAGEC2ENSG00000046774.92193.657101414.610600.632803.728802.66640K562NAA15
MAGEC2ENSG00000046774.92291.249801435.097400.674903.328402.21390K562PABPN1
MAGEC2ENSG00000046774.92053.301401685.762700.284402.140001.42290K562PPIG
MAGEC2ENSG00000046774.92120.243601356.007700.644808.346107.04190K562PRPF8
MAGEC2ENSG00000046774.93254.172201683.580200.9507018.4544017.08420K562PUS1
MAGEC2ENSG00000046774.92385.507101640.335300.540206.305905.43570K562RBM15
MAGEC2ENSG00000046774.91914.906801562.140100.293703.406302.50680K562SF3A3
MAGEC2ENSG00000046774.91048.812501423.97060-0.441205.237002.82890K562SLTM
MAGEC2ENSG00000046774.91074.744401600.44740-0.5745012.6770010.86640K562SRPK2
MAGEC2ENSG00000046774.92075.160501709.545800.279501.973901.36910K562TARDBP
MAGEC2ENSG00000046774.92600.785201706.901700.607502.656501.39690K562UTP18
MAGEC2ENSG00000046774.93761.094002804.531000.423304.953203.74430K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for MAGEC2 is not available on ENCORE database.





6 RBPs can affect the splicing of MAGEC2 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEMAGEC2ENSG00000046774.9chrX-1412919161412919931412901301412918391412921471412922410.085000.004200.06485includedK562SF3B4
SEMAGEC2ENSG00000046774.9chrX-1412919161412919931412901301412918391412921471412922410.065000.001690.05494includedK562PRPF8
SEMAGEC2ENSG00000046774.9chrX-1412919161412919931412901301412918391412921471412922410.080000.000300.03009includedK562SUPV3L1
SEMAGEC2ENSG00000046774.9chrX-1412919161412919931412901301412918391412921471412922410.126000.000000.00006includedK562EFTUD2
SEMAGEC2ENSG00000046774.9chrX-1412919161412919931412901301412918391412921471412922410.315000.000000.00000includedK562HNRNPK
A3SSMAGEC2ENSG00000046774.9chrX-1412921471412923531412921471412922411412928881412930760.129000.000000.00000longerK562AQR
A3SSMAGEC2ENSG00000046774.9chrX-1412919161412920431412919161412919931412921471412922410.233000.019280.09240longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for MAGEC2 is not avaliable on ENCORE database.