LINC01004

General Information

Gene Name : LINC01004
Gene ID : ENSG00000228393.3
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: LINC01004)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	LINC01004	ENSG00000228393.3	3.65	0.92	2.29	ENCSR000AEF
HepG2	LINC01004	ENSG00000228393.3	1.33	2.57	1.95	ENCSR985KAT
K562	LINC01004	ENSG00000228393.3	0.77	0.83	0.80	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for LINC01004 is not avaliable on ENCORE database.

Proteins bound to RNA

LINC01004 RNA is bound by 21 proteins.

eCLIP assay for LINC01004 is not avaliable on ENCORE database.

21 proteins are bound to LINC01004 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr7	104653211	104653273	-	intron-Distal	3.33668	6.71630	HepG2	PRPF4
chr7	104622560	104622644	-	intron-Distal	4.97335	6.37913	K562	CPSF6
chr7	104641641	104641734	-	intron-Distal	3.66006	12.69756	HepG2	HNRNPK
chr7	104652906	104652938	-	intron-Distal	4.05110	7.49772	K562	TIA1
chr7	104626762	104626852	-	intron-Distal	3.00856	4.72062	K562	KHDRBS1
chr7	104652938	104652971	-	intron-Distal	3.37020	4.11240	K562	TIA1
chr7	104652369	104652425	-	intron-Distal	3.01295	3.21744	HepG2	HNRNPC
chr7	104645737	104645823	-	intron-Distal	4.22338	9.38020	HepG2	QKI
chr7	104636217	104636301	-	intron-Distal	3.29421	4.61081	K562	GTF2F1
chr7	104653298	104653351	-	intron-Distal	4.20350	8.62696	K562	RBM15
chr7	104653269	104653301	-	intron-Distal	4.14596	4.08332	K562	NONO
chr7	104653093	104653164	-	intron-Distal	3.28335	12.19627	K562	NONO
chr7	104652898	104652964	-	intron-Distal	3.16283	5.10735	HepG2	SFPQ
chr7	104622466	104622540	-	intron-Distal,intron-Proximal	3.68284	5.61949	K562	KHSRP
chr7	104640942	104641009	-	intron-Distal	3.12921	5.20672	HepG2	PCBP2
chr7	104622558	104622636	-	intron-Distal	4.11949	4.00239	HepG2	KHSRP
chr7	104653220	104653298	-	intron-Distal	3.37811	7.43197	K562	RBM15
chr7	104636029	104636146	-	intron-Distal	3.04073	5.19171	K562	QKI
chr7	104653030	104653094	-	intron-Distal	4.07655	3.97747	K562	FUS
chr7	104645823	104645848	-	intron-Distal	4.30935	10.60587	HepG2	QKI
chr7	104645848	104645908	-	intron-Distal	4.28595	17.97679	HepG2	QKI
chr7	104636090	104636144	-	intron-Distal	3.40600	5.01093	HepG2	QKI
chr7	104653149	104653208	-	intron-Distal	3.26816	15.89757	HepG2	PRPF4
chr7	104636966	104637026	-	intron-Distal	4.11058	6.77270	K562	QKI
chr7	104628253	104628306	-	intron-Distal	4.23640	3.94088	HepG2	QKI
chr7	104635752	104635814	-	intron-Distal	3.42185	5.01093	HepG2	QKI
chr7	104653407	104653490	-	intron-Distal,intron-Proximal	4.61650	10.91141	HepG2	NCBP2
chr7	104621495	104621573	-	intron-Distal	3.93956	6.08171	HepG2	QKI
chr7	104653081	104653154	-	intron-Distal	4.52081	5.86741	HepG2	SRSF9
chr7	104653083	104653187	-	intron-Distal	5.91557	16.08125	HepG2	GTF2F1
chr7	104653351	104653397	-	intron-Distal	3.47515	3.93112	K562	RBM15
chr7	104653096	104653173	-	intron-Distal	3.12840	5.17640	HepG2	DGCR8
chr7	104624584	104624650	-	intron-Distal	4.19870	4.48497	K562	NONO
chr7	104652987	104653019	-	intron-Distal	3.24677	3.84725	K562	NONO
chr7	104636970	104637041	-	intron-Distal	3.79480	9.76045	HepG2	QKI
chr7	104653068	104653094	-	intron-Distal	3.22009	3.10946	HepG2	SFPQ
chr7	104650884	104650964	-	intron-Distal	4.00388	4.47016	HepG2	CSTF2
chr7	104624736	104624884	-	intron-Distal	3.03889	6.43905	K562	NONO
chr7	104622552	104622657	-	intron-Distal	4.24716	12.86756	K562	KHSRP
chr7	104622412	104622471	-	intron-Distal,intron-Proximal	4.06248	3.02621	K562	CPSF6
chr7	104653164	104653192	-	intron-Distal	3.83998	6.34658	K562	NONO
chr7	104652887	104652979	-	intron-Distal	4.33280	4.74172	HepG2	TIAL1
chr7	104645822	104645922	-	intron-Distal	4.03650	26.25510	K562	QKI
chr7	104653082	104653189	-	intron-Distal	3.38221	13.51949	K562	CSTF2T
chr7	104636029	104636090	-	intron-Distal	4.23204	12.96501	HepG2	QKI
chr7	104653082	104653199	-	intron-Distal	4.55397	3.41237	HepG2	TRA2A
chr7	104628251	104628317	-	intron-Distal	4.20369	7.80895	K562	QKI
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for LINC01004 is not avaliable on ENCORE database.

Summary
DE Affected by

Diffrential Expression

The Knockdown/knockout assay for LINC01004 is not available on ENCORE database.
18 RBPs can affect the levels of LINC01004.

The Knockdown/knockout RNA-Seq assay for LINC01004 is not available on ENCORE database.

18 RBPs can affect the gene expression of LINC01004 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
LINC01004	ENSG00000228393.3	28.84730	8.14400	1.82450	2.44750	1.88810	HepG2	EIF2S1
LINC01004	ENSG00000228393.3	30.76670	9.00120	1.77310	2.58720	1.96790	HepG2	EIF4A3
LINC01004	ENSG00000228393.3	38.29360	7.78270	2.29870	4.40010	2.25340	HepG2	EXOSC9
LINC01004	ENSG00000228393.3	27.88770	8.94020	1.64110	2.08330	1.31780	HepG2	G3BP2
LINC01004	ENSG00000228393.3	30.70490	8.52530	1.84850	2.01770	1.41500	HepG2	HNRNPK
LINC01004	ENSG00000228393.3	37.59360	9.08160	2.04940	3.54320	2.79960	HepG2	MAGOH
LINC01004	ENSG00000228393.3	30.12800	9.34860	1.68820	1.99790	1.45540	HepG2	NCBP2
LINC01004	ENSG00000228393.3	28.81780	8.32750	1.79090	2.54890	1.85280	HepG2	PABPC4
LINC01004	ENSG00000228393.3	33.12880	11.15490	1.57030	2.26940	1.72710	HepG2	SF3B4
LINC01004	ENSG00000228393.3	14.24030	37.72250	-1.40540	2.42180	1.83150	HepG2	SRSF5
LINC01004	ENSG00000228393.3	41.59400	20.71340	1.00570	1.83740	1.39800	HepG2	SSB
LINC01004	ENSG00000228393.3	12.60660	42.90430	-1.76690	3.96160	3.24130	HepG2	SUCLG1
LINC01004	ENSG00000228393.3	27.12750	9.07450	1.57980	1.95830	1.31980	HepG2	UCHL5
LINC01004	ENSG00000228393.3	40.80000	74.11680	-0.86120	2.02580	1.52600	K562	AGGF1
LINC01004	ENSG00000228393.3	205.29070	99.52040	1.04450	5.41620	4.64250	K562	AQR
LINC01004	ENSG00000228393.3	81.46250	35.70130	1.19010	2.83990	1.39900	K562	ILF2
LINC01004	ENSG00000228393.3	112.87460	54.25100	1.05690	2.52480	1.59070	K562	PABPN1
LINC01004	ENSG00000228393.3	39.42420	76.48800	-0.95620	2.17350	1.68040	K562	PUS1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

LINC01004

General Information

Functions

Localization

Domains (AlphaFold: LINC01004)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for LINC01004 is not avaliable on ENCORE database.

21 proteins are bound to LINC01004 RNA:

eCLIP assay for LINC01004 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for LINC01004 is not available on ENCORE database.

18 RBPs can affect the gene expression of LINC01004 :

The Knockdown/knockout RNA-Seq assay for LINC01004 is not available on ENCORE database.

No RBPs affect the alternative splcing events of LINC01004 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for LINC01004 is not avaliable on ENCORE database.