KHDRBS3

General Information

Gene Name       : KHDRBS3
Gene ID             : ENSG00000131773.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: KHDRBS3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878KHDRBS3ENSG00000131773.130.600.740.67ENCSR000AEF
HepG2KHDRBS3ENSG00000131773.1329.7421.4425.59ENCSR985KAT
K562KHDRBS3ENSG00000131773.130.851.030.94ENCSR000AEO

Assays

1 Released experiments are available on ENCORE database.

Assay TypeExp_NameENCODE IDTarget labelBiosampleStatusLinked AntibodyControlsMethodNote
RNA Bind-n-SeqRBNS: KHDRBS3ENCSR583NVIKHDRBS3cell-free sampleReleasedENCSR335RUM  






  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  
  GeneName    gene_aliases    Status    Project    Note  
KHDRBS3KHDRBS3ReleasedENCODE3


  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for KHDRBS3 is not avaliable on ENCORE database.


  • The binding motifs of KHDRBS3

    • Trulli

Proteins bound to RNA
  • KHDRBS3 RNA is bound by 3 proteins.  







eCLIP assay for KHDRBS3 is not avaliable on ENCORE database.





3 proteins are bound to KHDRBS3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr8136469701136469865+5'-UTR3.663016.48236HepG2DDX3X
chr8136469712136469872+5'-UTR3.070593.21309HepG2GRWD1
chr8136554933136555015+CDS,intron-Distal,intron-Proximal4.198863.06595HepG2BCLAF1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for KHDRBS3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for KHDRBS3 is not available on ENCORE database.

  • 52 RBPs can affect the levels of KHDRBS3.  








The Knockdown/knockout RNA-Seq assay for KHDRBS3 is not available on ENCORE database.





52 RBPs can affect the gene expression of KHDRBS3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
KHDRBS3ENSG00000131773.9397.50000220.419300.850606.718005.24950HepG2ADAR
KHDRBS3ENSG00000131773.9151.87260396.24760-1.3835011.5630010.54890HepG2AKAP1
KHDRBS3ENSG00000131773.9285.56650390.05460-0.449802.987002.27790HepG2AUH
KHDRBS3ENSG00000131773.9156.39790471.33650-1.591506.003405.16210HepG2BOP1
KHDRBS3ENSG00000131773.9263.13240367.33970-0.481302.742501.97390HepG2CALR
KHDRBS3ENSG00000131773.9369.42850519.09520-0.490702.405901.50410HepG2CCAR1
KHDRBS3ENSG00000131773.9492.75170311.485600.661604.626303.64030HepG2CIRBP
KHDRBS3ENSG00000131773.9105.25400298.91070-1.505809.967108.54840HepG2CNOT7
KHDRBS3ENSG00000131773.9237.17820432.73930-0.867502.637401.96460HepG2CPSF6
KHDRBS3ENSG00000131773.9242.19500353.41850-0.545203.593002.87980HepG2CELF1
KHDRBS3ENSG00000131773.9198.33900379.98670-0.9380010.134808.85650HepG2DAZAP1
KHDRBS3ENSG00000131773.9301.30620225.554600.417702.587301.77860HepG2DDX19B
KHDRBS3ENSG00000131773.9216.72990379.55630-0.808405.285504.44490HepG2DDX3X
KHDRBS3ENSG00000131773.9313.90880233.331900.427902.306001.67800HepG2DKC1
KHDRBS3ENSG00000131773.9119.34350221.94980-0.895105.699304.72050HepG2DNAJC21
KHDRBS3ENSG00000131773.9144.14990219.99400-0.609903.460902.74620HepG2DNAJC2
KHDRBS3ENSG00000131773.9172.65790313.43520-0.860305.283804.48060HepG2EIF2S1
KHDRBS3ENSG00000131773.9339.86390220.207900.626003.932602.67120HepG2EIF3G
KHDRBS3ENSG00000131773.9243.86950447.83090-0.876809.063008.07960HepG2ETF1
KHDRBS3ENSG00000131773.9123.75730199.62820-0.689803.408802.09470HepG2FAM120A
KHDRBS3ENSG00000131773.9149.73140222.24770-0.569802.616301.49970HepG2FASTKD2
KHDRBS3ENSG00000131773.9217.22230433.42540-0.996603.157002.07060HepG2FTO
KHDRBS3ENSG00000131773.9142.41740235.03610-0.722803.863202.94280HepG2FUBP3
KHDRBS3ENSG00000131773.9117.21100324.20520-1.4678012.9242011.54120HepG2G3BP1
KHDRBS3ENSG00000131773.9515.51280224.076201.2019010.478109.34310HepG2HNRNPA1
KHDRBS3ENSG00000131773.9172.99570328.36670-0.924606.242305.22180HepG2HNRNPK
KHDRBS3ENSG00000131773.9231.98450468.19810-1.013103.173902.50570HepG2HNRNPLL
KHDRBS3ENSG00000131773.9202.55930329.53540-0.702103.905003.11650HepG2IGF2BP2
KHDRBS3ENSG00000131773.9188.61870291.38730-0.627502.654001.36740HepG2ILF3
KHDRBS3ENSG00000131773.9278.04020376.79530-0.438502.551401.81920HepG2NOL12
KHDRBS3ENSG00000131773.9180.65340273.17360-0.596602.140201.37550HepG2PABPC1
KHDRBS3ENSG00000131773.9188.68330320.44940-0.764104.545703.63200HepG2PABPC4
KHDRBS3ENSG00000131773.9226.67500359.69100-0.666104.306403.58240HepG2PUF60
KHDRBS3ENSG00000131773.9261.62010381.83600-0.545504.396303.68660HepG2PUM1
KHDRBS3ENSG00000131773.9236.08090381.55210-0.692605.051704.15940HepG2PUM2
KHDRBS3ENSG00000131773.9338.30080248.415300.445502.816002.19650HepG2PUS1
KHDRBS3ENSG00000131773.9163.55740269.36220-0.719802.506301.83410HepG2RAVER1
KHDRBS3ENSG00000131773.9659.99630374.304600.8181010.553109.68510HepG2RBM22
KHDRBS3ENSG00000131773.9436.98600330.150800.404401.860201.30460HepG2SF3A3
KHDRBS3ENSG00000131773.9144.92500274.40310-0.921005.312703.95880HepG2SMNDC1
KHDRBS3ENSG00000131773.9208.11470515.67190-1.309104.343403.35560HepG2SNRNP70
KHDRBS3ENSG00000131773.9234.51770355.15220-0.598704.199103.45680HepG2SRSF5
KHDRBS3ENSG00000131773.9222.54730314.68870-0.499803.261402.67230HepG2SRSF9
KHDRBS3ENSG00000131773.9282.42790367.06240-0.378102.233601.76150HepG2SSB
KHDRBS3ENSG00000131773.9103.09280252.05360-1.289808.406806.83180HepG2SUPT6H
KHDRBS3ENSG00000131773.9255.07470347.63690-0.446702.789602.22720HepG2TAF15
KHDRBS3ENSG00000131773.9126.85610240.58130-0.923306.055905.36850HepG2TIAL1
KHDRBS3ENSG00000131773.9144.60580242.73750-0.747305.058904.34240HepG2TRIM56
KHDRBS3ENSG00000131773.9420.67310319.238500.398001.893501.36290HepG2U2AF1
KHDRBS3ENSG00000131773.967.2521032.283701.058702.515301.96960K562AGGF1
KHDRBS3ENSG00000131773.94.4157019.17700-2.118702.051201.30580K562BOP1
KHDRBS3ENSG00000131773.967.8047036.151300.907202.167601.40330K562DKC1
KHDRBS3ENSG00000131773.961.5927013.616702.177305.405704.34570K562GRSF1
KHDRBS3ENSG00000131773.946.5487018.712101.314702.915402.05200K562MAGOH
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for KHDRBS3 is not available on ENCORE database.





4 RBPs can affect the splicing of KHDRBS3 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEKHDRBS3ENSG00000131773.9chr8+1366538381366539691366191981366192801366573011366573600.104000.000060.01239includedHepG2HNRNPM
SEKHDRBS3ENSG00000131773.9chr8+1366538381366539691366191981366192801366573011366573600.088000.000950.02446includedHepG2SRSF1
SEKHDRBS3ENSG00000131773.9chr8+1366538381366539691366192521366192801366573011366573600.072000.000100.00485includedHepG2SF3A3
SEKHDRBS3ENSG00000131773.9chr8+136619197136619280136594120136594316136657301136657360-0.142000.000840.02667excludedHepG2SF3A3
MXEKHDRBS3ENSG00000131773.9chr8+1365941201365943161366191971366192801365696901365698301366573011366573600.181000.002160.060671includedHepG2HNRNPC

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for KHDRBS3 is not avaliable on ENCORE database.