Experiment Information (Status: Released)

RBP	KHDRBS3
gene_aliases
Status	Released
Status_date	2022-07-15
Project	ENCODE3
Note
ID	49

Motif Logo

Sample Information

Sample_Name	Sample_Type	Read_size_range	rbns_protein_concentration	FILE_ID
KHDRBS3-1300	RBNS	20-20	1300	KHDRBS3_1300.fastq.gz
KHDRBS3-320	RBNS	20-20	320	KHDRBS3_320.fastq.gz
KHDRBS3-5	RBNS	20-20	5	KHDRBS3_5.fastq.gz
KHDRBS3-80	RBNS	20-20	80	KHDRBS3_80.fastq.gz
KHDRBS3-input	CN	20-20	0	KHDRBS3_input.fastq.gz

Data Submission Information

ENCODE_alias	ENCODE_accession	object_type	assay_type	Sample_ID	SAMPLENAMEID	Selected	Status	Status_Date	Project	protocol_folder	protocol_file_name	ID
chris-burge:KHDRBS3	ENCSR583NVI	experiment	RNA Bind-n-Seq	KHDRBS3		Yes	Released	2022-07-12	ENCODE3			8049
chris-burge:KHDRBS3_SNRPA-input-cntl	ENCSR335RUM	experiment	RNA Bind-n-Seq	KHDRBS3		Yes	Released	2022-07-12	ENCODE3			8050
chris-burge:lib-KHDRBS3-1	ENCLB356UHT	library	RNA Bind-n-Seq	KHDRBS3		Yes	Released	2022-07-12	ENCODE3			8322
chris-burge:lib-KHDRBS3-3	ENCLB027YNA	library	RNA Bind-n-Seq	KHDRBS3		Yes	Released	2022-07-12	ENCODE3			8323
chris-burge:lib-KHDRBS3-4	ENCLB601QSY	library	RNA Bind-n-Seq	KHDRBS3		Yes	Released	2022-07-12	ENCODE3			8324
chris-burge:lib-KHDRBS3-5	ENCLB960RYS	library	RNA Bind-n-Seq	KHDRBS3		Yes	Released	2022-07-12	ENCODE3			8325
chris-burge:lib-KHDRBS3-input-cntl	ENCLB002LKW	library	RNA Bind-n-Seq	KHDRBS3		Yes	Released	2022-07-12	ENCODE3			8326
chris-burge:KHDRBS3_1300.fastq.gz	ENCFF793XRU	file_fastq	RNA Bind-n-Seq	KHDRBS3		Yes	Released	2022-07-14	ENCODE3			8752
chris-burge:KHDRBS3_320.fastq.gz	ENCFF118MEC	file_fastq	RNA Bind-n-Seq	KHDRBS3		Yes	Released	2022-07-14	ENCODE3			8753
chris-burge:KHDRBS3_5.fastq.gz	ENCFF612DYP	file_fastq	RNA Bind-n-Seq	KHDRBS3		Yes	Released	2022-07-14	ENCODE3			8754
chris-burge:KHDRBS3_80.fastq.gz	ENCFF993IHW	file_fastq	RNA Bind-n-Seq	KHDRBS3		Yes	Released	2022-07-14	ENCODE3			8755
chris-burge:KHDRBS3_input.fastq.gz	ENCFF385FEF	file_fastq	RNA Bind-n-Seq	KHDRBS3		Yes	Released	2022-07-14	ENCODE3			8756
chris-burge:KHDRBS3_enrichment_R.4mers.txt	ENCFF668MVP	file_enrichment	RNA Bind-n-Seq	KHDRBS3		Yes	Released	2022-07-14	ENCODE3			9204
chris-burge:KHDRBS3_enrichment_R.5mers.txt	ENCFF378CHX	file_enrichment	RNA Bind-n-Seq	KHDRBS3		Yes	Released	2022-07-14	ENCODE3			9205
chris-burge:KHDRBS3_enrichment_R.6mers.txt	ENCFF324JGS	file_enrichment	RNA Bind-n-Seq	KHDRBS3		Yes	Released	2022-07-14	ENCODE3			9206
chris-burge:KHDRBS3_enrichment_R.7mers.txt	ENCFF709CRG	file_enrichment	RNA Bind-n-Seq	KHDRBS3		Yes	Released	2022-07-14	ENCODE3			9207
chris-burge:KHDRBS3_est_binding_frac.4mers.txt	ENCFF130WFJ	file_library-fraction	RNA Bind-n-Seq	KHDRBS3		Yes	Released	2022-07-14	ENCODE3			9208
chris-burge:KHDRBS3_est_binding_frac.5mers.txt	ENCFF223NMR	file_library-fraction	RNA Bind-n-Seq	KHDRBS3		Yes	Released	2022-07-14	ENCODE3			9209
chris-burge:KHDRBS3_est_binding_frac.6mers.txt	ENCFF905COP	file_library-fraction	RNA Bind-n-Seq	KHDRBS3		Yes	Released	2022-07-14	ENCODE3			9210
chris-burge:KHDRBS3_est_binding_frac.7mers.txt	ENCFF667QWI	file_library-fraction	RNA Bind-n-Seq	KHDRBS3		Yes	Released	2022-07-14	ENCODE3			9211

File Information

file_name	file_format	output_type	assay_type	lab	derived_from	controlled_by	Project	Note
KHDRBS3.logo.png	png	document	RNA Bind-n-Seq	Burge Lab			ENCODE3
KHDRBS3_1300.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		KHDRBS3_input.fastq.gz	ENCODE3
KHDRBS3_320.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		KHDRBS3_input.fastq.gz	ENCODE3
KHDRBS3_5.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		KHDRBS3_input.fastq.gz	ENCODE3
KHDRBS3_80.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab		KHDRBS3_input.fastq.gz	ENCODE3
KHDRBS3_input.fastq.gz	fastq	reads	RNA Bind-n-Seq	Burge Lab			ENCODE3
KHDRBS3_enrichment_R.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	KHDRBS3_1300.fastq.gz,KHDRBS3_320.fastq.gz,KHDRBS3_5.fastq.gz,KHDRBS3_80.fastq.gz,KHDRBS3_input.fastq.gz		ENCODE3
KHDRBS3_est_binding_frac.4mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	KHDRBS3_1300.fastq.gz,KHDRBS3_320.fastq.gz,KHDRBS3_5.fastq.gz,KHDRBS3_80.fastq.gz,KHDRBS3_input.fastq.gz		ENCODE3
KHDRBS3_enrichment_R.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	KHDRBS3_1300.fastq.gz,KHDRBS3_320.fastq.gz,KHDRBS3_5.fastq.gz,KHDRBS3_80.fastq.gz,KHDRBS3_input.fastq.gz		ENCODE3
KHDRBS3_est_binding_frac.5mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	KHDRBS3_1300.fastq.gz,KHDRBS3_320.fastq.gz,KHDRBS3_5.fastq.gz,KHDRBS3_80.fastq.gz,KHDRBS3_input.fastq.gz		ENCODE3
KHDRBS3_enrichment_R.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	KHDRBS3_1300.fastq.gz,KHDRBS3_320.fastq.gz,KHDRBS3_5.fastq.gz,KHDRBS3_80.fastq.gz,KHDRBS3_input.fastq.gz		ENCODE3
KHDRBS3_est_binding_frac.6mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	KHDRBS3_1300.fastq.gz,KHDRBS3_320.fastq.gz,KHDRBS3_5.fastq.gz,KHDRBS3_80.fastq.gz,KHDRBS3_input.fastq.gz		ENCODE3
KHDRBS3_enrichment_R.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	KHDRBS3_1300.fastq.gz,KHDRBS3_320.fastq.gz,KHDRBS3_5.fastq.gz,KHDRBS3_80.fastq.gz,KHDRBS3_input.fastq.gz		ENCODE3
KHDRBS3_est_binding_frac.7mers.txt	tsv	enrichment	RNA Bind-n-Seq	Burge Lab	KHDRBS3_1300.fastq.gz,KHDRBS3_320.fastq.gz,KHDRBS3_5.fastq.gz,KHDRBS3_80.fastq.gz,KHDRBS3_input.fastq.gz		ENCODE3