HOXB2

General Information

Gene Name       : HOXB2
Gene ID             : ENSG00000173917.10
Essential Gene : No

Functions

Localization

Domains (AlphaFold: HOXB2)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878HOXB2ENSG00000173917.102.281.742.01ENCSR000AEF
HepG2HOXB2ENSG00000173917.100.000.000.00ENCSR985KAT
K562HOXB2ENSG00000173917.1023.5021.9122.70ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for HOXB2 is not avaliable on ENCORE database.



Proteins bound to RNA
  • HOXB2 RNA is bound by 8 proteins.  







eCLIP assay for HOXB2 is not avaliable on ENCORE database.





8 proteins are bound to HOXB2 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr174662019146620287-3'-UTR,intron-Distal4.092633.77503K562TIA1
chr174662036446620418-3'-UTR,intron-Distal4.9447714.54210K562RBM15
chr174662104146621106-CDS,intron-Distal3.390944.40370K562AKAP1
chr174662054646620601-CDS,intron-Distal,intron-Proximal4.5766210.06857K562RBM15
chr174662064746620709-CDS,intron-Distal3.857516.76837K562UPF1
chr174662043846620481-CDS,intron-Distal,intron-Proximal4.912385.89791K562RBM15
chr174662082846620934-CDS,intron-Distal,intron-Proximal3.218614.06711K562AKAP1
chr174662063346620713-CDS,intron-Distal4.9514415.23670K562RBM15
chr174662105646621106-CDS,intron-Distal3.181885.44101K562UPF1
chr174662095446621012-CDS,intron-Distal,intron-Proximal3.141695.45410K562UPF1
chr174662106446621120-CDS,intron-Distal3.647058.41541K562RBM15
chr174662094746621004-CDS,intron-Distal,intron-Proximal4.284958.71170K562RBM15
chr174662105646621139-CDS,intron-Distal3.7652623.69373K562AQR
chr174662163546621690-intron-Distal3.341503.91614K562BUD13
chr174662113246621166-intron-Distal3.012043.87595K562RBM15
chr174662113046621217-intron-Distal4.100613.96304K562CSTF2T
chr174662113946621218-intron-Distal4.094947.78072K562GTF2F1
chr174662178846621876-intron-Distal3.766337.22920K562AQR
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for HOXB2 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for HOXB2 is not available on ENCORE database.

  • 36 RBPs can affect the levels of HOXB2.  








The Knockdown/knockout RNA-Seq assay for HOXB2 is not available on ENCORE database.





36 RBPs can affect the gene expression of HOXB2 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
HOXB2ENSG00000173917.91595.84100942.661400.759407.758906.87640K562AGGF1
HOXB2ENSG00000173917.91537.59820980.909800.648407.541506.41680K562AKAP8L
HOXB2ENSG00000173917.91479.773001029.263200.523706.040504.62650K562ATP5C1
HOXB2ENSG00000173917.9750.96420522.242800.523904.323602.94820K562CCAR1
HOXB2ENSG00000173917.91433.749801126.441400.347902.924701.70680K562CCDC124
HOXB2ENSG00000173917.91046.770401376.44210-0.395004.099102.90150K562CELF1
HOXB2ENSG00000173917.92602.000801484.657500.8094025.5293023.74260K562DDX47
HOXB2ENSG00000173917.91136.16890803.700300.499306.795205.74210K562EIF2S2
HOXB2ENSG00000173917.9578.25750344.853600.745607.608006.29630K562EIF3G
HOXB2ENSG00000173917.9878.90900669.504100.392502.543301.47030K562FKBP4
HOXB2ENSG00000173917.9702.366001155.71740-0.7185012.185709.97500K562GLRX3
HOXB2ENSG00000173917.91933.94090972.576100.991604.662402.95180K562HNRNPA2B1
HOXB2ENSG00000173917.91282.09980835.845900.617102.657901.74680K562HNRNPM
HOXB2ENSG00000173917.91549.986501040.892700.574305.533004.27600K562KIF1C
HOXB2ENSG00000173917.91294.00650996.469700.376802.505701.49900K562MAK16
HOXB2ENSG00000173917.91620.296401166.076400.474505.171703.84820K562MBNL1
HOXB2ENSG00000173917.91010.785001215.07200-0.265602.732901.92870K562MTPAP
HOXB2ENSG00000173917.91463.32970817.343700.840106.711305.11770K562NAA15
HOXB2ENSG00000173917.9992.773801350.13380-0.443608.267007.07570K562NSUN2
HOXB2ENSG00000173917.91767.56160850.437801.055406.501004.79170K562PABPN1
HOXB2ENSG00000173917.9480.76900862.15970-0.842608.693907.22350K562PCBP3
HOXB2ENSG00000173917.9372.71410661.26820-0.827208.447807.07570K562POLR2G
HOXB2ENSG00000173917.9906.19740462.146100.9714016.1836014.64830K562PTBP1
HOXB2ENSG00000173917.93042.24960972.594001.6451048.3208045.98110K562PUS1
HOXB2ENSG00000173917.91877.98680947.811500.986407.292506.36070K562RBM15
HOXB2ENSG00000173917.9608.11390443.094900.456603.247602.33050K562RBM22
HOXB2ENSG00000173917.9561.28810388.720800.529903.117602.24750K562RPS19
HOXB2ENSG00000173917.91114.492201332.11890-0.257302.114501.39510K562SF3A3
HOXB2ENSG00000173917.9989.074901364.77390-0.464508.112406.60850K562SRPK2
HOXB2ENSG00000173917.9739.182301189.43390-0.686302.810101.41430K562TRIP6
HOXB2ENSG00000173917.9574.39230339.170000.759905.903704.17190K562U2AF1
HOXB2ENSG00000173917.9500.23600350.400300.513502.621901.83980K562U2AF2
HOXB2ENSG00000173917.91063.906701422.86450-0.419402.905401.67080K562UTP3
HOXB2ENSG00000173917.9906.824801224.95880-0.433803.730602.71350K562WDR3
HOXB2ENSG00000173917.9810.46860485.517800.739103.722001.81480K562XRCC6
HOXB2ENSG00000173917.9823.750601092.63040-0.407503.514902.52170K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for HOXB2 is not available on ENCORE database.






No RBPs affect the alternative splcing events of HOXB2 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for HOXB2 is not avaliable on ENCORE database.