HCG17

General Information

Gene Name : HCG17
Gene ID : ENSG00000270604.5
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: HCG17)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	HCG17	ENSG00000270604.5	0.00	0.22	0.11	ENCSR000AEF
HepG2	HCG17	ENSG00000270604.5	0.35	0.23	0.29	ENCSR985KAT
K562	HCG17	ENSG00000270604.5	0.38	0.35	0.36	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for HCG17 is not avaliable on ENCORE database.

Proteins bound to RNA

HCG17 RNA is bound by 30 proteins.

eCLIP assay for HCG17 is not avaliable on ENCORE database.

30 proteins are bound to HCG17 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr6	30269600	30269701	-	intron-Distal	4.06993	3.41398	HepG2	CSTF2
chr6	30293639	30293744	-	intron-Distal	4.45829	17.87500	HepG2	PRPF4
chr6	30281817	30281881	-	intron-Distal	3.23764	5.59320	HepG2	SUGP2
chr6	30258586	30258651	-	intron-Distal	3.21550	6.00731	HepG2	KHSRP
chr6	30256472	30256563	-	intron-Distal	4.05296	8.23533	HepG2	HLTF
chr6	30269223	30269314	-	intron-Distal	3.62041	5.35818	K562	SAFB2
chr6	30269614	30269744	-	intron-Distal	4.03381	8.40926	K562	SAFB2
chr6	30277449	30277525	-	intron-Distal	3.34275	6.27063	HepG2	HNRNPL
chr6	30293584	30293689	-	intron-Distal	3.27967	3.39478	K562	TAF15
chr6	30269836	30269923	-	intron-Distal	3.09140	3.34630	K562	SAFB2
chr6	30258794	30258848	-	intron-Distal	4.76017	3.98292	HepG2	XRCC6
chr6	30285312	30285403	-	intron-Distal	3.51466	5.14628	K562	TARDBP
chr6	30261762	30261852	-	intron-Distal	3.72974	16.33991	HepG2	HNRNPL
chr6	30293571	30293711	-	intron-Distal	3.82131	7.32016	K562	GTF2F1
chr6	30293564	30293640	-	intron-Distal	3.12506	3.40381	HepG2	DROSHA
chr6	30253034	30253095	-	intron-Distal	4.04710	4.24478	HepG2	CSTF2
chr6	30293600	30293693	-	intron-Distal	4.31915	3.58731	HepG2	PCBP2
chr6	30259676	30259772	-	intron-Distal	3.22135	4.09267	K562	FAM120A
chr6	30254988	30255071	-	intron-Distal	3.36138	6.63189	HepG2	HLTF
chr6	30268185	30268279	-	intron-Distal	3.84424	6.57828	K562	SAFB2
chr6	30285225	30285287	-	intron-Distal	4.87933	33.45102	HepG2	RBFOX2
chr6	30293573	30293639	-	intron-Distal	3.20352	7.88817	HepG2	PRPF4
chr6	30269439	30269512	-	intron-Distal	3.74725	6.87558	HepG2	HLTF
chr6	30260381	30260391	-	intron-Distal	3.49796	10.12893	HepG2	U2AF2
chr6	30265010	30265134	-	intron-Distal	3.17654	5.98546	K562	SAFB2
chr6	30256633	30256718	-	intron-Distal	4.08093	3.01533	HepG2	SRSF1
chr6	30279646	30279718	-	intron-Distal	5.20390	8.56566	HepG2	SUGP2
chr6	30269009	30269098	-	intron-Distal	3.59110	9.10256	HepG2	HLTF
chr6	30256555	30256709	-	intron-Distal	3.51550	5.31167	HepG2	GRWD1
chr6	30275614	30275670	-	intron-Distal	3.67825	7.74580	HepG2	MATR3
chr6	30293643	30293749	-	intron-Distal	5.17494	7.26171	HepG2	GTF2F1
chr6	30264868	30264956	-	intron-Distal	3.11984	7.81539	HepG2	HLTF
chr6	30258162	30258235	-	intron-Distal	4.11935	4.60713	HepG2	XPO5
chr6	30258985	30259102	-	intron-Distal,intron-Proximal	4.36914	3.92684	K562	KHSRP
chr6	30267486	30267577	-	intron-Distal	4.13755	6.52185	HepG2	HLTF
chr6	30283759	30283823	-	intron-Distal	4.52527	5.78279	HepG2	ILF3
chr6	30264874	30264988	-	intron-Distal	3.29095	9.21831	K562	SAFB2
chr6	30257752	30257829	-	intron-Distal	3.95575	3.33164	K562	SAFB2
chr6	30256931	30257008	-	intron-Distal,intron-Proximal	3.89574	8.52328	HepG2	HLTF
chr6	30276999	30277049	-	intron-Distal	3.63307	6.71645	HepG2	PTBP1
chr6	30275837	30275872	-	intron-Distal	4.72953	5.37222	HepG2	MATR3
chr6	30270348	30270442	-	intron-Distal	3.91235	3.06084	HepG2	HNRNPK
chr6	30256854	30256995	-	intron-Distal,intron-Proximal	4.98205	6.44435	K562	SAFB2
chr6	30260320	30260381	-	intron-Distal	3.89877	14.84707	HepG2	U2AF2
chr6	30271581	30271654	-	intron-Distal	3.85610	3.25414	K562	RBFOX2
chr6	30277290	30277351	-	intron-Distal	3.35623	5.01093	HepG2	QKI
chr6	30265249	30265379	-	intron-Distal	3.91170	6.37872	K562	SAFB2
chr6	30285150	30285317	-	intron-Distal	3.10369	3.58872	K562	RBFOX2
chr6	30263906	30263994	-	intron-Distal,intron-Proximal	3.70563	5.80880	HepG2	GRWD1
chr6	30277402	30277500	-	intron-Distal	3.23212	3.86715	K562	HNRNPK
chr6	30284236	30284313	-	intron-Distal	3.28813	5.58948	HepG2	HNRNPM
chr6	30271587	30271648	-	intron-Distal	3.82614	4.24143	HepG2	RBFOX2
chr6	30293552	30293640	-	intron-Distal	3.70229	7.46743	HepG2	GTF2F1
chr6	30256628	30256710	-	intron-Distal	4.19133	6.01402	HepG2	SRSF9
chr6	30263968	30264058	-	intron-Distal,intron-Proximal	3.12697	6.96734	HepG2	SF3A3
chr6	30259094	30259174	-	intron-Distal,intron-Proximal	3.68824	4.64228	HepG2	KHSRP
chr6	30268145	30268191	-	intron-Distal	3.64055	5.04128	HepG2	HLTF
chr6	30276998	30277045	-	intron-Distal	4.03947	5.63677	K562	PTBP1
chr6	30276206	30276285	-	intron-Distal	3.23900	3.71597	K562	MATR3
chr6	30257311	30257387	-	intron-Distal	4.22030	4.02395	HepG2	KHSRP
chr6	30293674	30293730	-	intron-Distal	3.13538	3.46580	HepG2	CSTF2T
chr6	30283468	30283543	-	intron-Distal	3.22536	4.97937	HepG2	HNRNPM
chr6	30279014	30279070	-	intron-Distal	3.35572	4.95510	HepG2	MATR3
chr6	30263907	30264000	-	intron-Distal,intron-Proximal	3.67121	4.77403	HepG2	SRSF1
chr6	30258979	30259038	-	intron-Distal	5.83285	15.35953	HepG2	QKI
chr6	30271955	30272015	-	intron-Distal	3.57292	4.08242	HepG2	PTBP1
chr6	30277423	30277504	-	intron-Distal	3.24673	7.09164	HepG2	PCBP2
chr6	30253273	30253346	-	intron-Distal	4.52935	4.74256	HepG2	HLTF
chr6	30256789	30256854	-	intron-Distal	3.82325	8.30426	HepG2	HLTF
chr6	30279001	30279087	-	intron-Distal	3.21006	3.29499	HepG2	PRPF4
chr6	30258587	30258642	-	intron-Distal	4.04287	22.96023	HepG2	U2AF2
chr6	30281794	30281882	-	intron-Distal	3.01930	6.21294	HepG2	HNRNPM
chr6	30268387	30268469	-	intron-Distal	4.24118	5.00594	K562	SAFB2
chr6	30290563	30290651	-	intron-Distal	3.87567	12.14839	HepG2	ILF3
chr6	30275534	30275607	-	intron-Distal	3.28885	3.50045	HepG2	SFPQ
chr6	30268979	30269057	-	intron-Distal	4.31924	4.95197	K562	SAFB2
chr6	30276209	30276266	-	intron-Distal	4.85126	8.36737	HepG2	MATR3
chr6	30260281	30260342	-	intron-Distal	4.19013	3.20319	K562	UPF1
chr6	30267487	30267586	-	intron-Distal	3.44418	5.10657	K562	SAFB2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for HCG17 is not avaliable on ENCORE database.

Summary
DE Affected by

Diffrential Expression

The Knockdown/knockout assay for HCG17 is not available on ENCORE database.
2 RBPs can affect the levels of HCG17.

The Knockdown/knockout RNA-Seq assay for HCG17 is not available on ENCORE database.

2 RBPs can affect the gene expression of HCG17 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
HCG17	ENSG00000270604.1	10.63960	1.48440	2.84130	2.02170	1.50060	HepG2	PUF60
HCG17	ENSG00000270604.1	13.71260	0.47520	4.85080	3.02730	2.53770	HepG2	SRSF1
HCG17	ENSG00000270604.1	16.72790	2.47670	2.75570	2.34360	1.59330	K562	PUF60
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

HCG17

General Information

Functions

Localization

Domains (AlphaFold: HCG17)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for HCG17 is not avaliable on ENCORE database.

30 proteins are bound to HCG17 RNA:

eCLIP assay for HCG17 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for HCG17 is not available on ENCORE database.

2 RBPs can affect the gene expression of HCG17 :

The Knockdown/knockout RNA-Seq assay for HCG17 is not available on ENCORE database.

No RBPs affect the alternative splcing events of HCG17 on ENCORE database.

The Knockdown/knockout RNA-Seq assay for HCG17 is not avaliable on ENCORE database.