FANCC

General Information

Gene Name       : FANCC
Gene ID             : ENSG00000158169.13
Essential Gene : Yes

Functions

Localization

Domains (AlphaFold: FANCC)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878FANCCENSG00000158169.1310.915.968.44ENCSR000AEF
HepG2FANCCENSG00000158169.138.3813.6511.02ENCSR985KAT
K562FANCCENSG00000158169.139.079.649.36ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for FANCC is not avaliable on ENCORE database.



Proteins bound to RNA
  • FANCC RNA is bound by 10 proteins.  







eCLIP assay for FANCC is not avaliable on ENCORE database.





10 proteins are bound to FANCC RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr99786167697861733-3'-UTR,intron-Distal4.078933.54010K562UPF1
chr99807948198079595-5'-UTR,intron-Distal,intron-Proximal5.208666.03756HepG2FAM120A
chr99800970798009789-CDS,intron-Distal,intron-Proximal4.067345.06180HepG2BCLAF1
chr99800298098003027-CDS,intron-Distal,intron-Proximal4.715074.37348HepG2BCLAF1
chr99799929597999394-intron-Distal4.990845.61339K562QKI
chr99791210997912200-intron-Distal,intron-Proximal4.453183.85435K562PRPF8
chr99798514897985269-intron-Distal4.264033.92684K562KHSRP
chr99799200597992079-intron-Distal4.262204.66266K562TARDBP
chr99793287597932990-intron-Distal4.867933.98095HepG2HNRNPL
chr99797270697972850-intron-Distal4.309545.62258K562KHSRP
chr99799719697997300-intron-Distal3.691584.58716HepG2QKI
chr99794613397946181-intron-Distal4.923816.58335HepG2QKI
chr99796303897963112-intron-Distal4.170304.54401K562KHSRP
chr99797758097977696-intron-Distal5.426128.72587HepG2PCBP2
chr99807951098079588-intron-Distal,intron-Proximal4.263573.48173K562GTF2F1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for FANCC is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for FANCC is not available on ENCORE database.

  • 39 RBPs can affect the levels of FANCC.  








The Knockdown/knockout RNA-Seq assay for FANCC is not available on ENCORE database.





39 RBPs can affect the gene expression of FANCC :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
FANCCENSG00000158169.7186.48030260.58320-0.482702.155701.46960HepG2CALR
FANCCENSG00000158169.7420.04220226.269900.892404.977003.94650HepG2CNOT7
FANCCENSG00000158169.7142.24740223.36300-0.651002.928601.82480HepG2CSTF2
FANCCENSG00000158169.7190.28960291.75850-0.616603.367402.62410HepG2DDX21
FANCCENSG00000158169.7166.77820355.48910-1.091907.191506.01340HepG2DDX55
FANCCENSG00000158169.7262.20640357.48270-0.447201.851201.33550HepG2DDX6
FANCCENSG00000158169.7167.24720264.01720-0.658604.037003.20110HepG2DNAJC21
FANCCENSG00000158169.7237.50780322.19850-0.440002.254201.33910HepG2GNB2L1
FANCCENSG00000158169.7285.36740415.65080-0.542604.165903.05720HepG2HNRNPA2B1
FANCCENSG00000158169.7331.83340411.98580-0.312101.890401.31900HepG2HNRNPL
FANCCENSG00000158169.7114.77220201.11810-0.809303.610002.90100HepG2HNRNPLL
FANCCENSG00000158169.7219.87910294.52200-0.421702.394901.82770HepG2HNRNPU
FANCCENSG00000158169.7229.76490300.84470-0.388902.141101.48690HepG2ILF2
FANCCENSG00000158169.7281.50790385.46920-0.453401.956101.42120HepG2MATR3
FANCCENSG00000158169.7145.10840267.79930-0.884005.447504.34560HepG2MSI2
FANCCENSG00000158169.7159.07360224.90740-0.499602.446501.30640HepG2NAA15
FANCCENSG00000158169.7190.52190342.73620-0.847104.759003.42200HepG2PCBP2
FANCCENSG00000158169.7345.32840462.70240-0.422102.582102.07690HepG2RBM22
FANCCENSG00000158169.7213.79320336.55690-0.654604.153403.34360HepG2RPLP0
FANCCENSG00000158169.7100.19880189.93350-0.922604.880304.09000HepG2RPS19
FANCCENSG00000158169.7251.27850351.11210-0.482602.597801.82090HepG2RPS2
FANCCENSG00000158169.7178.73720262.28580-0.553303.219502.53520HepG2SAFB2
FANCCENSG00000158169.7232.36970337.43880-0.538202.430001.53580HepG2SMNDC1
FANCCENSG00000158169.7115.86420221.48730-0.934803.852602.92320HepG2SNRNP70
FANCCENSG00000158169.7461.75720356.627500.372601.879101.46790HepG2SRSF1
FANCCENSG00000158169.7338.22840422.69170-0.321601.833601.30980HepG2SRSF5
FANCCENSG00000158169.7208.85160290.11870-0.474201.994801.51180HepG2SRSF9
FANCCENSG00000158169.7149.54100353.89780-1.242808.819107.72310HepG2SUPV3L1
FANCCENSG00000158169.7143.18820237.21380-0.728302.993101.95780HepG2TFIP11
FANCCENSG00000158169.7146.51850286.18930-0.965907.539806.78890HepG2TIAL1
FANCCENSG00000158169.7359.15570556.70780-0.632305.090104.19280K562AKAP8L
FANCCENSG00000158169.7473.47760639.55120-0.433802.538101.97060K562AQR
FANCCENSG00000158169.7216.72060335.71030-0.631403.600002.37060K562CSTF2
FANCCENSG00000158169.7469.29720599.05180-0.352202.547601.71140K562DKC1
FANCCENSG00000158169.7530.89260348.960500.605303.677802.46880K562EIF3D
FANCCENSG00000158169.7420.37190532.12960-0.340102.238801.43510K562HNRNPU
FANCCENSG00000158169.7529.64160407.639900.377602.147101.44350K562HSPD1
FANCCENSG00000158169.7435.69560590.80290-0.439402.824401.98960K562KIF1C
FANCCENSG00000158169.7480.01990661.84900-0.463403.456102.42170K562MBNL1
FANCCENSG00000158169.7316.78530463.90850-0.550302.617301.76300K562NAA15
FANCCENSG00000158169.7379.05650537.93870-0.505003.908203.22040K562RBM15
FANCCENSG00000158169.7458.59380352.399600.379902.223801.58130K562SRSF1
FANCCENSG00000158169.7342.70340559.77320-0.707903.028501.65040K562UTP18
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for FANCC is not available on ENCORE database.





4 RBPs can affect the splicing of FANCC :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEFANCCENSG00000158169.7chr9-9787348697873627978693479786955197873744978739190.384000.000070.00186includedK562PUS1
SEFANCCENSG00000158169.7chr9-979487829794892797934318979344299800293098003025-0.130000.003690.04924excludedK562PUS1
SEFANCCENSG00000158169.7chr9-9787348697873627978693479786955197873744978739190.205000.002690.05743includedK562RBM15
SEFANCCENSG00000158169.7chr9-9787348697873627978693479786955197873744978739190.201000.004240.08192includedK562AGGF1
A3SSFANCCENSG00000158169.7chr9-9800293098003040980029309800302598009713980097980.179000.018670.08990longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for FANCC is not avaliable on ENCORE database.