FAM172A

General Information

Gene Name       : FAM172A
Gene ID             : ENSG00000113391.18
Essential Gene : No

Functions

Localization

Domains (AlphaFold: FAM172A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878FAM172AENSG00000113391.187.067.667.36ENCSR000AEF
HepG2FAM172AENSG00000113391.182.605.554.08ENCSR985KAT
K562FAM172AENSG00000113391.182.453.222.83ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for FAM172A is not avaliable on ENCORE database.



Proteins bound to RNA
  • FAM172A RNA is bound by 17 proteins.  







eCLIP assay for FAM172A is not avaliable on ENCORE database.





17 proteins are bound to FAM172A RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr59329452393294575-CDS,intron-Distal4.187843.71570HepG2BCLAF1
chr59315985393159970-CDS,intron-Distal,intron-Proximal3.181166.91872HepG2BCLAF1
chr59321717093217229-CDS,intron-Distal,intron-Proximal4.372824.04372HepG2BCLAF1
chr59329459993294639-CDS,intron-Distal5.049085.23259HepG2BCLAF1
chr59330016293300226-CDS,intron-Distal,intron-Proximal3.402276.20035HepG2BCLAF1
chr59339897293399090-intron-Distal4.466924.87593HepG2MATR3
chr59344027193440313-intron-Distal4.581215.44508K562EXOSC5
chr59343867593438782-intron-Distal3.998923.34098HepG2HNRNPM
chr59301884093018887-intron-Distal3.010434.06895K562PUM1
chr59340324393403297-intron-Distal4.164773.59909K562EXOSC5
chr59343529693435333-intron-Distal3.735284.61337K562EXOSC5
chr59343398693434049-intron-Distal4.534544.80399K562EXOSC5
chr59328026993280394-intron-Distal3.235145.86983HepG2PTBP1
chr59307447693074593-intron-Distal4.927725.04227HepG2HNRNPL
chr59339933593399385-intron-Distal4.733814.80399K562EXOSC5
chr59336138293361469-intron-Distal4.914844.99795K562QKI
chr59339844393398496-intron-Distal4.558446.09831K562HNRNPM
chr59325824793258308-intron-Distal4.861476.17200HepG2PCBP2
chr59339876393398823-intron-Distal4.868255.12361K562EXOSC5
chr59301885993018912-intron-Distal3.6528313.10795K562ZNF622
chr59301883793018961-intron-Distal3.8797014.72633HepG2BCLAF1
chr59331890393318987-intron-Distal3.520733.02891HepG2HNRNPL
chr59339911993399182-intron-Distal4.212287.61465K562EXOSC5
chr59343437693434406-intron-Distal4.064763.30696K562EXOSC5
chr59301863893018687-intron-Distal4.630114.70478HepG2BCLAF1
chr59339744693397550-intron-Distal4.035323.45805K562KHSRP
chr59339865693398694-intron-Distal3.825734.91037K562EXOSC5
chr59339922993399285-intron-Distal5.279189.02315K562EXOSC5
chr59343349893433542-intron-Distal3.957253.01445K562EXOSC5
chr59340800493408078-intron-Distal3.458363.68431K562TARDBP
chr59311074093110843-intron-Distal3.519933.27276HepG2HNRNPL
chr59336134093361463-intron-Distal4.885095.20135HepG2QKI
chr59340255193402596-intron-Distal3.470024.31658K562EXOSC5
chr59301986093019996-intron-Distal4.301644.24565HepG2HNRNPL
chr59343483293434875-intron-Distal4.457254.48560K562EXOSC5
chr59301883993018947-intron-Distal4.760156.71516K562TARDBP
chr59301864293018682-intron-Distal3.527134.20387K562ZNF622
chr59308392093084059-intron-Distal3.790827.62792HepG2PTBP1
chr59301884693018914-intron-Distal3.332213.08145HepG2HLTF
chr59343893693439013-intron-Distal4.749736.08953K562EXOSC5
chr59343672793436796-intron-Distal4.249733.59909K562EXOSC5
chr59343945193439502-intron-Distal5.233818.69493K562EXOSC5
chr59301884093018887-intron-Distal3.571909.66822K562GRWD1
chr59309223793092359-intron-Distal3.154353.69184HepG2SUGP2
chr59340183693401899-intron-Distal4.686976.08869K562EXOSC5
chr59340209893402155-intron-Distal3.667983.43829K562EXOSC5
chr59301895793019006-intron-Distal3.365344.89070K562UCHL5
chr59339734793397412-intron-Distal4.042233.24603K562KHSRP
chr59339920393399250-intron-Distal4.104973.07980HepG2HNRNPM
chr59339849293398544-intron-Distal4.274893.62366HepG2HNRNPM
chr59343868393438794-intron-Distal4.680035.31529HepG2SUGP2
chr59340030493400377-intron-Distal3.846023.54208HepG2SUGP2
chr59340993493410157-intron-Distal4.230423.89294K562KHSRP
chr59343583793435918-intron-Distal4.988767.71416K562EXOSC5
chr59308388193083967-intron-Distal5.732048.96592HepG2QKI
chr59339894693399025-intron-Distal3.427414.14346HepG2SUGP2
chr59301862593018693-intron-Distal4.392298.94398K562UCHL5
chr59301883893018950-intron-Distal4.1207520.72467K562UCHL5
chr59301883893018894-intron-Distal4.295644.25524K562CPSF6
chr59344132793441392-intron-Distal3.536473.43829K562EXOSC5
chr59340227093402308-intron-Distal4.111313.30696K562EXOSC5
chr59307489493074952-intron-Distal3.164733.10640HepG2SUGP2
chr59343625393436304-intron-Distal3.431024.31658K562EXOSC5
chr59339931293399396-intron-Distal4.111193.54147K562HNRNPM
chr59339894893399027-intron-Distal5.223508.04096K562EXOSC5
chr59328024093280394-intron-Distal4.610225.68967HepG2PCBP2
chr59344090993440986-intron-Distal4.238198.21369K562EXOSC5
chr59343342893433479-intron-Distal4.457254.48623K562EXOSC5
chr59344036493440403-intron-Distal4.749736.08953K562EXOSC5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for FAM172A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for FAM172A is not available on ENCORE database.

  • 37 RBPs can affect the levels of FAM172A.  








The Knockdown/knockout RNA-Seq assay for FAM172A is not available on ENCORE database.





37 RBPs can affect the gene expression of FAM172A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
FAM172AENSG00000113391.12245.72330335.25740-0.448202.637201.88590HepG2AKAP8L
FAM172AENSG00000113391.12580.35610369.996500.649307.182606.16040HepG2AUH
FAM172AENSG00000113391.12295.58830376.24500-0.348102.117201.54270HepG2CELF1
FAM172AENSG00000113391.12387.13500567.44580-0.551603.473302.78230HepG2DDX3X
FAM172AENSG00000113391.12416.34250319.230300.383102.336801.70580HepG2DKC1
FAM172AENSG00000113391.12324.38700522.45260-0.687604.926804.02250HepG2FXR1
FAM172AENSG00000113391.12355.83960490.71100-0.463602.602801.92350HepG2HNRNPK
FAM172AENSG00000113391.12311.43670492.68160-0.661704.580003.73140HepG2IGF2BP2
FAM172AENSG00000113391.12362.43200505.85430-0.481002.325201.56880HepG2LARP4
FAM172AENSG00000113391.12282.20550522.63470-0.889107.470906.40750HepG2MAGOH
FAM172AENSG00000113391.12381.60520525.56980-0.461802.337801.75510HepG2MATR3
FAM172AENSG00000113391.12469.34060304.782800.622802.657801.71120HepG2MTPAP
FAM172AENSG00000113391.12244.00970537.95800-1.1406011.2478010.01360HepG2NCBP2
FAM172AENSG00000113391.12320.35010441.20050-0.461803.567202.89650HepG2PCBP1
FAM172AENSG00000113391.12338.40790249.460400.439902.691401.92670HepG2PRPF4
FAM172AENSG00000113391.12344.26360448.90930-0.382902.719802.17600HepG2PTBP1
FAM172AENSG00000113391.12284.37490406.53630-0.515604.649403.92310HepG2PUM1
FAM172AENSG00000113391.12261.60130406.25740-0.635004.978004.09230HepG2PUM2
FAM172AENSG00000113391.12215.37720318.45830-0.564202.590701.55320HepG2RPS5
FAM172AENSG00000113391.12124.30690191.22020-0.621302.003601.32450HepG2RRP9
FAM172AENSG00000113391.12231.27560363.56250-0.652603.456902.37030HepG2SMNDC1
FAM172AENSG00000113391.12322.60430487.86850-0.596705.495504.88660HepG2SRSF1
FAM172AENSG00000113391.12176.54010378.11630-1.0988012.7747011.56190HepG2SRSF5
FAM172AENSG00000113391.12303.53980396.88890-0.386802.660102.11700HepG2SRSF9
FAM172AENSG00000113391.12327.34160430.05220-0.393702.923302.28770HepG2SUCLG1
FAM172AENSG00000113391.12196.53440370.16240-0.913403.784002.54530HepG2TBRG4
FAM172AENSG00000113391.12268.01910402.94400-0.588204.362303.32070HepG2TIA1
FAM172AENSG00000113391.12177.26210272.44560-0.620101.897501.46600HepG2TIAL1
FAM172AENSG00000113391.12247.55970374.12180-0.595703.995002.92190HepG2TUFM
FAM172AENSG00000113391.12232.93280414.07710-0.830008.980507.84360HepG2UPF1
FAM172AENSG00000113391.12281.25520399.77620-0.507303.579702.91370HepG2UTP3
FAM172AENSG00000113391.12360.69720246.191600.550904.090403.29830HepG2ZC3H8
FAM172AENSG00000113391.1279.14440124.99190-0.659302.125901.37900K562FIP1L1
FAM172AENSG00000113391.1257.92980107.73650-0.895103.257302.29130K562HNRNPU
FAM172AENSG00000113391.12322.98590202.962500.670203.569502.64510K562PUF60
FAM172AENSG00000113391.1267.15480116.08380-0.789602.219301.72190K562PUS1
FAM172AENSG00000113391.1264.83660113.08650-0.802502.670402.08640K562RBM15
FAM172AENSG00000113391.1241.32710102.21780-1.306504.829603.90050K562SRSF1
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for FAM172A is not available on ENCORE database.





3 RBPs can affect the splicing of FAM172A :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEFAM172AENSG00000113391.12chr5-934103509341047493388830933889329344721593447340-0.530000.002120.03835excludedK562SF3B4
SEFAM172AENSG00000113391.12chr5-934103509341047493388830933889329344721593447340-0.405000.000150.00557excludedHepG2HNRNPK
SEFAM172AENSG00000113391.12chr5-934103509341047493388830933889329344721593447340-0.405000.000180.03357excludedHepG2KHSRP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for FAM172A is not avaliable on ENCORE database.