CTD-2132N18.3

General Information

Gene Name       : CTD-2132N18.3
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CTD-2132N18.3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CTD-2132N18.3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CTD-2132N18.3 RNA is bound by 33 proteins.  







eCLIP assay for CTD-2132N18.3 is not avaliable on ENCORE database.





33 proteins are bound to CTD-2132N18.3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr174027237140272386-3'-UTR,CDS,intron-Distal5.176485.73530K562DDX24
chr174027231040272354-3'-UTR,CDS,intron-Distal4.3477118.55682HepG2PPIG
chr174027205640272134-3'-UTR,CDS,intron-Distal3.3150617.77397HepG2PPIG
chr174027235440272379-3'-UTR,CDS,intron-Distal3.7668411.64759HepG2PPIG
chr174027272440272761-3'-UTR,CDS,intron-Distal3.8225213.65160HepG2PPIG
chr174027232240272386-3'-UTR,CDS,intron-Distal3.4156811.74374HepG2BCLAF1
chr174027238540272387-3'-UTR,CDS,intron-Distal3.898696.81103HepG2PPIG
chr174027212840272135-3'-UTR,CDS,intron-Distal4.341535.18972HepG2GRWD1
chr174027208140272141-3'-UTR,CDS,intron-Distal,intron-Proximal3.986157.27033HepG2PABPN1
chr174027206440272128-3'-UTR,CDS,intron-Distal3.500728.65904HepG2GRWD1
chr174027761240277655-3'-UTR,5'-UTR,intron-Distal,intron-Proximal4.207233.27226HepG2IGF2BP3
chr174027764240277660-3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.8406213.33666K562PABPC4
chr174027759940277662-3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.8678617.63117K562PUM2
chr174030693240306999-5'-UTR,intron-Distal,intron-Proximal3.693197.91814HepG2DDX3X
chr174027769240277739-3'-UTR,5'-UTR,intron-Distal4.4675612.71857K562YBX3
chr174030692240306985-5'-UTR,intron-Distal,intron-Proximal5.121147.13477K562DDX3X
chr174027775540277803-3'-UTR,5'-UTR,intron-Distal3.661873.81620HepG2LARP4
chr174027760240277661-3'-UTR,5'-UTR,intron-Distal,intron-Proximal3.625946.35062K562IGF2BP1
chr174030690140307004-5'-UTR,intron-Distal,intron-Proximal3.788453.01533HepG2SRSF1
chr174030690940306932-5'-UTR,intron-Distal3.856523.76880HepG2DDX3X
chr174027780340277853-CDS,intron-Distal3.078275.34378K562YBX3
chr174028230940282374-CDS,intron-Distal,intron-Proximal4.077363.49905HepG2PPIG
chr174028229840282381-CDS,intron-Distal,intron-Proximal3.5480611.42172HepG2PRPF8
chr174028024140280303-CDS,intron-Distal,intron-Proximal3.205183.05460HepG2PPIG
chr174028023740280308-CDS,intron-Distal,intron-Proximal3.4195210.20548HepG2PRPF8
chr174028236440282418-CDS,intron-Distal4.6822211.17637K562YBX3
chr174027787240277916-CDS,intron-Distal,intron-Proximal3.129845.78926K562YBX3
chr174028069940280716-CDS,intron-Distal,intron-Proximal5.3024911.63893K562YBX3
chr174028241840282464-CDS,intron-Distal4.3044714.27079K562YBX3
chr174028067540280699-CDS,intron-Distal,intron-Proximal4.4449910.75300K562YBX3
chr174028072540280744-CDS,intron-Distal,intron-Proximal3.909843.04254K562UCHL5
chr174028078240280821-CDS,intron-Distal,intron-Proximal4.114913.44423K562BUD13
chr174028240340282446-CDS,intron-Distal4.073443.11282HepG2G3BP1
chr174028072940280757-CDS,intron-Distal,intron-Proximal3.441843.60157HepG2GRWD1
chr174028235440282364-CDS,intron-Distal,intron-Proximal3.269223.69775K562YBX3
chr174028235240282403-CDS,intron-Distal,intron-Proximal3.236464.18458HepG2G3BP1
chr174027158840271593-CDS,intron-Distal,intron-Proximal4.507205.36870HepG2SRSF9
chr174027157640271636-CDS,intron-Distal,intron-Proximal3.166704.87472K562SRSF1
chr174027298140273054-CDS,intron-Distal5.0995513.20429HepG2PPIG
chr174027701040277089-3'-UTR,intron-Distal4.2975912.07193HepG2FUBP3
chr174027160940271646-CDS,intron-Distal,intron-Proximal3.042043.67927HepG2UCHL5
chr174027331640273379-5'-UTR,CDS,intron-Distal,intron-Proximal3.783905.03370HepG2NCBP2
chr174027748640277561-3'-UTR,intron-Distal3.7555211.53879HepG2PCBP2
chr174027715740277218-3'-UTR,intron-Distal4.9172013.87936K562IGF2BP2
chr174027176040271809-intron-Distal,intron-Proximal3.955943.56713HepG2SF3B4
chr174027299440273111-CDS,intron-Distal,intron-Proximal4.003713.56076K562BUD13
chr174027724940277291-3'-UTR,intron-Distal3.310803.10464K562IGF2BP2
chr174027705840277109-3'-UTR,intron-Distal3.309417.69244K562FAM120A
chr174029236540292417-intron-Distal3.238363.39857HepG2HNRNPM
chr174027731740277372-3'-UTR,intron-Distal3.196043.92517K562IGF2BP2
chr174027737940277437-3'-UTR,intron-Distal3.821236.74427K562IGF2BP1
chr174027700740277056-3'-UTR,intron-Distal4.343998.11182K562IGF2BP1
chr174027715240277224-3'-UTR,intron-Distal3.955984.92519HepG2IGF2BP1
chr174028020740280268-intron-Distal,intron-Proximal5.170655.96317HepG2EFTUD2
chr174028040540280462-intron-Distal,intron-Proximal5.6564214.41773HepG2SF3A3
chr174027738440277451-3'-UTR,intron-Distal3.197686.63950K562IGF2BP2
chr174029897640299063-intron-Distal7.0330120.82570K562PTBP1
chr174027738040277436-3'-UTR,intron-Distal3.497075.73561HepG2IGF2BP1
chr174027726040277306-3'-UTR,intron-Distal4.010183.31330K562UPF1
chr174027931440279380-intron-Distal4.414545.04993HepG2QKI
chr174027737740277448-3'-UTR,intron-Distal3.763235.11392HepG2IGF2BP3
chr174028019740280268-intron-Distal,intron-Proximal3.646915.66421K562PRPF8
chr174027161340271630-CDS,intron-Distal,intron-Proximal5.033767.92891HepG2GRWD1
chr174027726340277440-3'-UTR,intron-Distal4.997246.71037HepG2UPF1
chr174027157040271608-CDS,intron-Distal,intron-Proximal4.514154.82934K562RBM15
chr174027726440277289-3'-UTR,intron-Distal3.062216.98725K562YBX3
chr174027714740277223-3'-UTR,intron-Distal3.450766.57140HepG2PCBP2
chr174027700940277072-3'-UTR,intron-Distal5.1446913.04183K562PABPC4
chr174027700940277064-3'-UTR,intron-Distal3.259313.53952HepG2KHSRP
chr174027761940277642-3'-UTR,intron-Distal,intron-Proximal3.9027516.02177K562PABPC4
chr174027305440273112-CDS,intron-Distal,intron-Proximal3.039748.66150HepG2PPIG
chr174029897940299077-intron-Distal5.0225215.23552HepG2PTBP1
chr174027700140277053-3'-UTR,intron-Distal5.155359.14311K562PUM2
chr174027744840277555-3'-UTR,intron-Distal3.633984.21068HepG2IGF2BP3
chr174027159340271635-CDS,intron-Distal,intron-Proximal4.879398.36563HepG2SRSF9
chr174030215540302305-intron-Distal3.642335.31375HepG2ILF3
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CTD-2132N18.3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CTD-2132N18.3 is not available on ENCORE database.

  • 13 RBPs can affect the levels of CTD-2132N18.3.  








The Knockdown/knockout RNA-Seq assay for CTD-2132N18.3 is not available on ENCORE database.





13 RBPs can affect the gene expression of CTD-2132N18.3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CTD-2132N18.3ENSG00000267261.1150.3919033.881902.1500014.3812012.86120HepG2CALR
CTD-2132N18.3ENSG00000267261.19.362000.0000099999.999902.995101.97970HepG2DHX30
CTD-2132N18.3ENSG00000267261.112.094500.0000099999.999902.447801.42450HepG2NONO
CTD-2132N18.3ENSG00000267261.1102.6544026.375301.960404.528502.13890HepG2NUFIP2
CTD-2132N18.3ENSG00000267261.1103.56090172.53530-0.736403.246401.51480HepG2NUP35
CTD-2132N18.3ENSG00000267261.124.471300.0000099999.999907.475506.49710HepG2SMN1
CTD-2132N18.3ENSG00000267261.192.7076026.604001.800903.528302.40910HepG2U2AF2
CTD-2132N18.3ENSG00000267261.125.0414099.64190-1.992402.875001.74400K562CPEB4
CTD-2132N18.3ENSG00000267261.1166.83820103.083700.694503.170702.47990K562DDX47
CTD-2132N18.3ENSG00000267261.1299.4497047.547802.654805.545603.32280K562HNRNPAB
CTD-2132N18.3ENSG00000267261.124.244800.0000099999.999902.906502.07060K562PUF60
CTD-2132N18.3ENSG00000267261.1116.430900.0000099999.9999033.5916030.34720K562PUM1
CTD-2132N18.3ENSG00000267261.114.367000.0000099999.999904.854903.79290K562U2AF2
CTD-2132N18.3ENSG00000267261.1164.4843024.122102.769409.264206.20280K562XPO5
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CTD-2132N18.3 is not available on ENCORE database.






No RBPs affect the alternative splcing events of CTD-2132N18.3 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for CTD-2132N18.3 is not avaliable on ENCORE database.