CCDC176

General Information

Gene Name       : CCDC176
Gene ID             :
Essential Gene : No

Functions

Localization

Domains (AlphaFold: CCDC176)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for CCDC176 is not avaliable on ENCORE database.



Proteins bound to RNA
  • CCDC176 RNA is bound by 1 proteins.  







eCLIP assay for CCDC176 is not avaliable on ENCORE database.





1 proteins are bound to CCDC176 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr147451292074513039+intron-Distal,intron-Proximal4.040863.41738HepG2PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for CCDC176 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for CCDC176 is not available on ENCORE database.

  • 46 RBPs can affect the levels of CCDC176.  








The Knockdown/knockout RNA-Seq assay for CCDC176 is not available on ENCORE database.





46 RBPs can affect the gene expression of CCDC176 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
CCDC176ENSG00000119636.1140.3321074.70610-0.889302.054101.53270HepG2BOP1
CCDC176ENSG00000119636.11124.3505074.857000.732102.461601.73090HepG2CALR
CCDC176ENSG00000119636.11159.1328068.585901.214105.804704.84220HepG2CPSF6
CCDC176ENSG00000119636.11174.3544048.363401.8499012.0641010.76530HepG2DDX21
CCDC176ENSG00000119636.1194.3318048.051000.973102.977301.63420HepG2DDX47
CCDC176ENSG00000119636.11115.9577065.932800.814402.663301.66850HepG2DDX5
CCDC176ENSG00000119636.11105.7744044.780101.240004.796403.94920HepG2DKC1
CCDC176ENSG00000119636.1182.4222049.150400.745702.184901.59250HepG2DNAJC2
CCDC176ENSG00000119636.11189.7931077.751701.287406.540605.58390HepG2GPKOW
CCDC176ENSG00000119636.11125.3929046.439801.432905.188103.24470HepG2HLTF
CCDC176ENSG00000119636.1123.2874085.55760-1.877306.213505.19580HepG2HNRNPK
CCDC176ENSG00000119636.11143.8805074.199500.955303.634302.92240HepG2HNRNPLL
CCDC176ENSG00000119636.1196.8300047.177601.037303.283502.25540HepG2HNRNPM
CCDC176ENSG00000119636.1198.0858056.509600.795402.696901.97260HepG2ILF2
CCDC176ENSG00000119636.11181.8111094.131000.949603.951302.95550HepG2LARP4
CCDC176ENSG00000119636.11199.9068091.115201.133506.042505.08250HepG2MAGOH
CCDC176ENSG00000119636.1147.6238093.78320-0.977602.693602.06850HepG2NCBP2
CCDC176ENSG00000119636.11142.5740065.788901.115704.471503.52600HepG2NSUN2
CCDC176ENSG00000119636.11117.9991069.907500.755202.337501.78310HepG2PUF60
CCDC176ENSG00000119636.1141.4317074.15410-0.839802.055701.47210HepG2PUM2
CCDC176ENSG00000119636.11144.7850047.672401.6026010.027208.97900HepG2PUS1
CCDC176ENSG00000119636.11143.1934092.486400.630602.200801.63280HepG2QKI
CCDC176ENSG00000119636.1139.8662083.94480-1.074303.021702.32060HepG2RBM25
CCDC176ENSG00000119636.1132.8459069.03420-1.071602.589201.92520HepG2RPLP0
CCDC176ENSG00000119636.11102.8827043.456501.243304.209003.04980HepG2RPS10
CCDC176ENSG00000119636.1192.4005050.431400.873502.362901.61930HepG2RPS2
CCDC176ENSG00000119636.1127.50200108.70500-1.982809.533608.22570HepG2SF3A3
CCDC176ENSG00000119636.1144.9330095.47210-1.087303.028702.51190HepG2SRFBP1
CCDC176ENSG00000119636.11154.0021092.810600.730502.899802.41910HepG2SRSF1
CCDC176ENSG00000119636.11144.2295049.797501.534106.407105.44160HepG2SUPV3L1
CCDC176ENSG00000119636.11119.0377072.310100.719002.120801.47420HepG2TARDBP
CCDC176ENSG00000119636.11111.4458053.761101.051603.927503.35360HepG2TIAL1
CCDC176ENSG00000119636.1188.6363054.235600.708602.089801.58660HepG2TRIM56
CCDC176ENSG00000119636.1153.33240106.02660-0.991303.896003.27680HepG2ZNF622
CCDC176ENSG00000119636.1176.36160139.37680-0.868103.211602.60830K562AGGF1
CCDC176ENSG00000119636.1183.74890145.03280-0.792202.778602.12350K562AKAP8L
CCDC176ENSG00000119636.1161.17040161.08280-1.396908.756807.67900K562DDX47
CCDC176ENSG00000119636.1134.0374082.13800-1.270904.194303.22250K562EIF3G
CCDC176ENSG00000119636.1189.36650181.93900-1.025605.414104.11920K562EIF4G2
CCDC176ENSG00000119636.11168.2992087.874000.937404.117102.14210K562FASTKD2
CCDC176ENSG00000119636.1138.2284070.66540-0.886401.905101.39830K562HNRNPC
CCDC176ENSG00000119636.11114.46980193.93380-0.760603.091601.89310K562MSI2
CCDC176ENSG00000119636.1167.44170120.84710-0.841502.195001.42980K562NAA15
CCDC176ENSG00000119636.1166.09600140.13820-1.084204.567403.82500K562RBM15
CCDC176ENSG00000119636.1153.83930120.13750-1.158003.073001.75280K562SNRNP200
CCDC176ENSG00000119636.11214.17150125.663000.769104.214903.34690K562UPF1
CCDC176ENSG00000119636.1171.71370111.80430-0.640702.161101.40580K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for CCDC176 is not available on ENCORE database.





2 RBPs can affect the splicing of CCDC176 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SECCDC176ENSG00000119636.11chr14+7448961874489847744860587448623774495886744959520.368000.000320.07740includedK562PPIL4
SECCDC176ENSG00000119636.11chr14+7448961874489847744860587448623774495886744959520.266000.004020.09506includedK562UTP18

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for CCDC176 is not avaliable on ENCORE database.