BBIP1

General Information

Gene Name       : BBIP1
Gene ID             : ENSG00000214413.7
Essential Gene : No

Functions

Localization

Domains (AlphaFold: BBIP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878BBIP1ENSG00000214413.720.5721.6821.12ENCSR000AEF
HepG2BBIP1ENSG00000214413.712.3118.6315.47ENCSR985KAT
K562BBIP1ENSG00000214413.716.6118.6717.64ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for BBIP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • BBIP1 RNA is bound by 1 proteins.  







eCLIP assay for BBIP1 is not avaliable on ENCORE database.





1 proteins are bound to BBIP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr10112670238112670375-intron-Distal4.422344.07628HepG2PTBP1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for BBIP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for BBIP1 is not available on ENCORE database.

  • 45 RBPs can affect the levels of BBIP1.  








The Knockdown/knockout RNA-Seq assay for BBIP1 is not available on ENCORE database.





45 RBPs can affect the gene expression of BBIP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
BBIP1ENSG00000214413.3708.72520452.310100.647802.257201.77230HepG2AKAP1
BBIP1ENSG00000214413.3188.80490292.25690-0.630304.489203.68080HepG2CKAP4
BBIP1ENSG00000214413.3460.33270303.610100.600402.675201.92400HepG2CNOT7
BBIP1ENSG00000214413.3298.19320466.69070-0.646206.652205.57480HepG2DAZAP1
BBIP1ENSG00000214413.3215.59990433.36350-1.007202.530701.93070HepG2DDX3X
BBIP1ENSG00000214413.3144.35470251.85130-0.803005.999105.09260HepG2DNAJC2
BBIP1ENSG00000214413.3316.56190215.353200.555702.640902.02340HepG2HNRNPLL
BBIP1ENSG00000214413.3207.90300283.42290-0.447002.522101.94350HepG2HNRNPU
BBIP1ENSG00000214413.3318.67370456.35430-0.518102.182301.45220HepG2LARP4
BBIP1ENSG00000214413.3219.32000410.75400-0.905202.269701.69370HepG2NCBP2
BBIP1ENSG00000214413.3133.84750232.18330-0.794702.446101.42340HepG2NONO
BBIP1ENSG00000214413.3237.73920399.12250-0.747506.478905.71030HepG2PTBP1
BBIP1ENSG00000214413.3342.40440468.96430-0.453803.797403.12620HepG2PUM1
BBIP1ENSG00000214413.3188.16870297.74980-0.662104.872704.09660HepG2PUS1
BBIP1ENSG00000214413.3230.74300333.96470-0.533402.292901.39880HepG2RBM27
BBIP1ENSG00000214413.3355.15100444.18250-0.322701.797901.34170HepG2NELFE
BBIP1ENSG00000214413.3304.07680413.70030-0.444202.890002.26150HepG2RECQL
BBIP1ENSG00000214413.3434.72000296.515400.551902.525601.61990HepG2RPS10
BBIP1ENSG00000214413.3123.62120191.24040-0.629502.599702.00300HepG2RPS19
BBIP1ENSG00000214413.3273.37220415.53250-0.604104.706203.96590HepG2SF3B4
BBIP1ENSG00000214413.3328.14340423.60660-0.368402.311601.66100HepG2SLBP
BBIP1ENSG00000214413.3213.88840307.84470-0.525302.262001.40520HepG2SMNDC1
BBIP1ENSG00000214413.3344.03540237.169400.536501.988201.33120HepG2SNRNP70
BBIP1ENSG00000214413.3345.87370436.19200-0.334701.934801.39960HepG2SRSF5
BBIP1ENSG00000214413.3450.25290352.863000.351502.385401.86530HepG2SRSF9
BBIP1ENSG00000214413.3307.84960400.11290-0.378202.440201.95250HepG2SSB
BBIP1ENSG00000214413.3355.19760496.05920-0.481903.950703.23100HepG2SUCLG1
BBIP1ENSG00000214413.3146.51850275.34890-0.910206.635705.92180HepG2TIAL1
BBIP1ENSG00000214413.3166.61560302.79930-0.861805.281404.42970HepG2U2AF1
BBIP1ENSG00000214413.3317.44080244.485100.376602.076601.48210HepG2ZC3H8
BBIP1ENSG00000214413.3300.71620431.51600-0.521003.798903.15270K562AGGF1
BBIP1ENSG00000214413.3273.40370414.71160-0.601103.538702.89120K562AQR
BBIP1ENSG00000214413.3276.30670401.46260-0.539004.258003.47340K562DDX47
BBIP1ENSG00000214413.3143.87270214.89300-0.578802.696001.90910K562EIF3G
BBIP1ENSG00000214413.3136.83440231.54850-0.758902.657301.85360K562EIF4A3
BBIP1ENSG00000214413.3356.58400457.96630-0.361002.171601.33440K562EIF4G2
BBIP1ENSG00000214413.3257.19990362.81490-0.496302.894201.81080K562HNRNPL
BBIP1ENSG00000214413.3212.22580315.13960-0.570403.366102.43270K562MAGOH
BBIP1ENSG00000214413.3175.76800272.04790-0.630203.977803.02250K562MTPAP
BBIP1ENSG00000214413.3226.00760302.27710-0.419502.269101.58730K562NSUN2
BBIP1ENSG00000214413.3174.34080261.22260-0.583402.568401.76780K562PCBP3
BBIP1ENSG00000214413.3124.13020200.35960-0.690703.299002.41940K562POLR2G
BBIP1ENSG00000214413.3210.33150306.17480-0.541702.798602.13070K562PTBP1
BBIP1ENSG00000214413.3214.96240293.60730-0.449802.173901.43320K562RBM22
BBIP1ENSG00000214413.3183.83920300.14880-0.707204.411803.52380K562SRSF1
BBIP1ENSG00000214413.3223.94350303.78000-0.439902.034201.42140K562TARDBP
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for BBIP1 is not available on ENCORE database.





15 RBPs can affect the splicing of BBIP1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SEBBIP1ENSG00000214413.3chr10-1126674371126675941126612951126613701126778781126779710.376000.000020.00075includedHepG2U2AF1
SEBBIP1ENSG00000214413.3chr10-112677878112677971112661295112661370112678878112679032-0.228000.000030.00153excludedHepG2HNRNPK
SEBBIP1ENSG00000214413.3chr10-1126674371126675941126612951126613701126778781126779920.491000.000030.00066includedHepG2U2AF2
SEBBIP1ENSG00000214413.3chr10-112677878112677971112661295112661370112678878112679032-0.389000.002470.02997excludedHepG2U2AF2
SEBBIP1ENSG00000214413.3chr10-1126607831126608801126599951126602841126612951126613700.069000.000080.01277includedHepG2SRSF7
SEBBIP1ENSG00000214413.3chr10-1126674371126675941126612951126613701126778781126779710.144000.000180.02087includedHepG2DDX3X
SEBBIP1ENSG00000214413.3chr10-112677878112677971112661295112661370112678878112678915-0.128000.000760.01360excludedK562PUS1
SEBBIP1ENSG00000214413.3chr10-1126674371126675941126612951126613701126778781126779710.105000.001850.08825includedHepG2NCBP2
SEBBIP1ENSG00000214413.3chr10-1126674371126675941126612951126613701126778781126779710.121000.000920.04054includedHepG2MATR3
SEBBIP1ENSG00000214413.3chr10-1126674371126675941126612951126613701126778781126779710.151000.000520.06043includedHepG2SSB
SEBBIP1ENSG00000214413.3chr10-1126607831126608801126599951126602841126612951126613700.057000.000030.00284includedHepG2PCBP1
SEBBIP1ENSG00000214413.3chr10-112677878112677971112661295112661370112678878112679032-0.149000.000290.01033excludedK562RBM15
SEBBIP1ENSG00000214413.3chr10-112667437112667594112661295112661370112677878112677971-0.132000.001790.06654excludedHepG2HNRNPU
SEBBIP1ENSG00000214413.3chr10-112667437112667594112661295112661370112678878112678959-0.461000.000730.02990excludedHepG2HNRNPC
SEBBIP1ENSG00000214413.3chr10-112677878112677971112661295112661370112678878112679032-0.190000.002410.07769excludedK562PTBP1
A3SSBBIP1ENSG00000214413.3chr10-1126778631126779921126778631126779711126788781126789190.054000.020440.09715longerK562AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for BBIP1 is not avaliable on ENCORE database.