TNFRSF10B

General Information

Gene Name : TNFRSF10B
Gene ID : ENSG00000120889.12
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TNFRSF10B)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TNFRSF10B	ENSG00000120889.12	38.06	41.18	39.62	ENCSR000AEF
HepG2	TNFRSF10B	ENSG00000120889.12	108.82	107.76	108.29	ENCSR985KAT
K562	TNFRSF10B	ENSG00000120889.12	24.48	20.04	22.26	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TNFRSF10B is not avaliable on ENCORE database.

Proteins bound to RNA

TNFRSF10B RNA is bound by 45 proteins.

CanvasJS.com

eCLIP assay for TNFRSF10B is not avaliable on ENCORE database.

45 proteins are bound to TNFRSF10B RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr8	22886039	22886064	-	3'-UTR,CDS,intron-Distal,intron-Proximal	6.10523	44.06100	HepG2	PPIG
chr8	22925837	22925926	-	intron-Distal	6.43183	35.47552	HepG2	PTBP1
chr8	22885658	22885747	-	intron-Distal,intron-Proximal	5.38165	32.41241	HepG2	HNRNPK
chr8	22886064	22886100	-	3'-UTR,CDS,intron-Distal	4.26795	31.29716	HepG2	PPIG
chr8	22885922	22886026	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.31449	30.83648	HepG2	BUD13
chr8	22885798	22885851	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.83297	30.57281	HepG2	PRPF8
chr8	22884769	22884865	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.01288	30.06263	HepG2	SF3A3
chr8	22885842	22885885	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.35549	29.82397	HepG2	PPIG
chr8	22885955	22886043	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.32533	27.75868	HepG2	PRPF8
chr8	22885122	22885238	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.23224	27.10565	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 170 entries

eCLIP assay for TNFRSF10B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TNFRSF10B is not available on ENCORE database.
142 RBPs can affect the levels of TNFRSF10B.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TNFRSF10B is not available on ENCORE database.

142 RBPs can affect the gene expression of TNFRSF10B :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TNFRSF10B	ENSG00000120889.8	6873.14460	2630.70080	1.38540	45.47910	43.62000	HepG2	BOP1
TNFRSF10B	ENSG00000120889.8	3150.96700	1070.11430	1.55790	38.36910	35.90570	K562	HSPD1
TNFRSF10B	ENSG00000120889.8	2939.77220	7578.45780	-1.36620	37.03890	34.70190	HepG2	CIRBP
TNFRSF10B	ENSG00000120889.8	8770.70980	5746.45480	0.60990	33.91350	32.54650	HepG2	ZNF622
TNFRSF10B	ENSG00000120889.8	432.45010	1134.09800	-1.39090	33.72900	31.23680	K562	SYNCRIP
TNFRSF10B	ENSG00000120889.8	763.33250	1837.17720	-1.26710	29.96380	28.11040	K562	FXR1
TNFRSF10B	ENSG00000120889.8	13416.39570	8874.63410	0.59610	28.63190	27.46170	HepG2	SRFBP1
TNFRSF10B	ENSG00000120889.8	11202.03760	7114.06260	0.65490	27.56530	25.87420	HepG2	SRSF5
TNFRSF10B	ENSG00000120889.8	381.08970	1007.42850	-1.40250	28.00690	25.32650	K562	SAFB
TNFRSF10B	ENSG00000120889.8	12862.58270	7857.38620	0.71100	25.69050	24.43410	HepG2	RBM22
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 171 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TNFRSF10B is not available on ENCORE database.

14 RBPs can affect the splicing of TNFRSF10B :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	TNFRSF10B	ENSG00000120889.8	chr8	-	22886052	22886206	22886052	22886115	22887122	22887234	0.13700	0.00000	0.00000	longer	K562	AQR
RI	TNFRSF10B	ENSG00000120889.8	chr8	-	22885843	22886115	22885843	22885954	22886041	22886115	0.22800	0.00000	0.00006	included	HepG2	SF3A3
RI	TNFRSF10B	ENSG00000120889.8	chr8	-	22885843	22886115	22885843	22885954	22886041	22886115	0.30500	0.00000	0.00000	included	HepG2	PRPF8
RI	TNFRSF10B	ENSG00000120889.8	chr8	-	22885843	22886115	22885843	22885954	22886041	22886115	0.14300	0.00004	0.00058	included	HepG2	SF3B4
RI	TNFRSF10B	ENSG00000120889.8	chr8	-	22885843	22886115	22885843	22885954	22886041	22886115	0.20200	0.00006	0.00297	included	HepG2	UCHL5
RI	TNFRSF10B	ENSG00000120889.8	chr8	-	22885843	22886115	22885843	22885954	22886041	22886115	0.16400	0.00011	0.00387	included	HepG2	PCBP2
RI	TNFRSF10B	ENSG00000120889.8	chr8	-	22885843	22886115	22885843	22885954	22886041	22886115	0.16000	0.00027	0.03715	included	HepG2	PRPF4
SE	TNFRSF10B	ENSG00000120889.8	chr8	-	22900650	22900756	22888271	22888385	22926263	22926692	-0.12900	0.00029	0.00432	excluded	K562	AQR
RI	TNFRSF10B	ENSG00000120889.8	chr8	-	22885843	22886115	22885843	22885954	22886041	22886115	0.12500	0.00039	0.00553	included	HepG2	TAF15
RI	TNFRSF10B	ENSG00000120889.8	chr8	-	22885843	22886115	22885843	22885954	22886041	22886115	0.12000	0.00071	0.01217	included	HepG2	PCBP1

Showing 1 to 10 of 17 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TNFRSF10B

General Information

Functions

Localization

Domains (AlphaFold: TNFRSF10B)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TNFRSF10B is not avaliable on ENCORE database.

45 proteins are bound to TNFRSF10B RNA:

eCLIP assay for TNFRSF10B is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TNFRSF10B is not available on ENCORE database.

142 RBPs can affect the gene expression of TNFRSF10B :

The Knockdown/knockout RNA-Seq assay for TNFRSF10B is not available on ENCORE database.

14 RBPs can affect the splicing of TNFRSF10B :

The Knockdown/knockout RNA-Seq assay for TNFRSF10B is not avaliable on ENCORE database.