PRRC1

General Information

Gene Name : PRRC1
Gene ID : ENSG00000164244.20
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PRRC1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PRRC1	ENSG00000164244.20	22.40	23.16	22.78	ENCSR000AEF
HepG2	PRRC1	ENSG00000164244.20	36.44	42.13	39.28	ENCSR985KAT
K562	PRRC1	ENSG00000164244.20	27.48	29.51	28.50	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PRRC1 is not avaliable on ENCORE database.

Proteins bound to RNA

PRRC1 RNA is bound by 31 proteins.

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eCLIP assay for PRRC1 is not avaliable on ENCORE database.

31 proteins are bound to PRRC1 RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr5	126859302	126859342	+	intron-Proximal	7.17920	31.33688	K562	AQR
chr5	126859280	126859302	+	intron-Proximal	6.05002	27.49272	K562	AQR
chr5	126890658	126890778	+	3'-UTR,polyA_site	4.03956	24.99680	K562	PUM2
chr5	126888560	126888625	+	3'-UTR,intron-Distal	6.28747	22.37223	K562	TIA1
chr5	126860333	126860481	+	CDS	3.87555	20.81180	K562	PCBP1
chr5	126889544	126889638	+	3'-UTR,CDS	4.04255	20.36681	K562	FAM120A
chr5	126859273	126859280	+	CDS,intron-Proximal	4.47113	18.77477	K562	AQR
chr5	126865923	126865985	+	intron-Proximal	6.51701	18.74766	K562	SF3B4
chr5	126862365	126862415	+	CDS	4.63961	18.26369	K562	YBX3
chr5	126862308	126862365	+	CDS,intron-Proximal	4.22292	17.49823	K562	YBX3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 100 entries

eCLIP assay for PRRC1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PRRC1 is not available on ENCORE database.
119 RBPs can affect the levels of PRRC1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PRRC1 is not available on ENCORE database.

119 RBPs can affect the gene expression of PRRC1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PRRC1	ENSG00000164244.16	11274.90320	5388.57970	1.06500	28.12750	26.37740	K562	PUS1
PRRC1	ENSG00000164244.16	1282.22550	3055.68550	-1.25280	27.85540	26.28720	HepG2	BOP1
PRRC1	ENSG00000164244.16	1470.68100	2566.88120	-0.80350	26.74960	25.18390	HepG2	UTP3
PRRC1	ENSG00000164244.16	1389.73030	2408.31580	-0.79320	23.03410	20.87610	HepG2	HNRNPA2B1
PRRC1	ENSG00000164244.16	1089.51860	2507.49490	-1.20260	21.40760	19.63740	HepG2	G3BP1
PRRC1	ENSG00000164244.16	1143.30590	1918.72620	-0.74690	20.58090	19.03870	HepG2	HNRNPU
PRRC1	ENSG00000164244.16	1669.06150	2718.69430	-0.70390	19.75040	18.56060	HepG2	NELFE
PRRC1	ENSG00000164244.16	438.74890	1052.84080	-1.26280	20.04120	18.04610	HepG2	UCHL5
PRRC1	ENSG00000164244.16	2037.04790	3143.73590	-0.62600	16.78260	15.50830	HepG2	ETF1
PRRC1	ENSG00000164244.16	1183.10720	2119.22350	-0.84100	14.93070	13.58220	HepG2	RPLP0
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 140 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PRRC1 is not available on ENCORE database.

5 RBPs can affect the splicing of PRRC1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	PRRC1	ENSG00000164244.16	chr5	+	126860222	126860612	126859151	126859274	126862309	126862470	-0.12700	0.00000	0.00000	excluded	K562	PUS1
SE	PRRC1	ENSG00000164244.16	chr5	+	126860222	126860612	126859151	126859274	126862309	126862470	-0.15800	0.00000	0.00000	excluded	K562	U2AF1
SE	PRRC1	ENSG00000164244.16	chr5	+	126860222	126860612	126859151	126859274	126862309	126862470	-0.21300	0.00000	0.00000	excluded	K562	U2AF2
A3SS	PRRC1	ENSG00000164244.16	chr5	+	126887373	126887570	126887398	126887570	126883464	126883613	0.08700	0.00000	0.00000	longer	K562	AQR
SE	PRRC1	ENSG00000164244.16	chr5	+	126860222	126860612	126859151	126859274	126862309	126862470	-0.06800	0.00022	0.01134	excluded	K562	TARDBP

Showing 1 to 5 of 5 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PRRC1

General Information

Functions

Localization

Domains (AlphaFold: PRRC1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PRRC1 is not avaliable on ENCORE database.

31 proteins are bound to PRRC1 RNA:

eCLIP assay for PRRC1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PRRC1 is not available on ENCORE database.

119 RBPs can affect the gene expression of PRRC1 :

The Knockdown/knockout RNA-Seq assay for PRRC1 is not available on ENCORE database.

5 RBPs can affect the splicing of PRRC1 :

The Knockdown/knockout RNA-Seq assay for PRRC1 is not avaliable on ENCORE database.