PHF21A

General Information

Gene Name : PHF21A
Gene ID : ENSG00000135365.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PHF21A)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PHF21A	ENSG00000135365.15	21.44	22.39	21.91	ENCSR000AEF
HepG2	PHF21A	ENSG00000135365.15	4.68	5.87	5.28	ENCSR985KAT
K562	PHF21A	ENSG00000135365.15	18.59	21.76	20.18	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PHF21A is not avaliable on ENCORE database.

Proteins bound to RNA

PHF21A RNA is bound by 29 proteins.

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eCLIP assay for PHF21A is not avaliable on ENCORE database.

29 proteins are bound to PHF21A RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr11	45954962	45955049	-	3'-UTR,intron-Distal,intron-Proximal	6.78977	27.12603	K562	UPF1
chr11	45955049	45955160	-	3'-UTR,intron-Distal	5.56444	22.14708	K562	UPF1
chr11	46101343	46101437	-	intron-Distal	5.41830	20.81865	HepG2	PTBP1
chr11	46057239	46057394	-	intron-Distal	6.34653	17.70285	K562	PTBP1
chr11	45967485	45967612	-	CDS,intron-Distal,intron-Proximal	3.98117	17.36142	HepG2	U2AF2
chr11	46101343	46101440	-	intron-Distal	5.47671	17.10652	K562	PTBP1
chr11	45991391	45991464	-	CDS,intron-Distal,intron-Proximal	5.53265	13.02559	K562	U2AF2
chr11	45970434	45970499	-	CDS,intron-Distal,intron-Proximal	4.78286	10.79362	K562	LIN28B
chr11	46141196	46141300	-	5'-UTR,intron-Distal	3.75827	9.43753	K562	EXOSC5
chr11	45986949	45987034	-	CDS,intron-Distal,intron-Proximal	5.32610	8.94848	K562	IGF2BP2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 78 entries

eCLIP assay for PHF21A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PHF21A is not available on ENCORE database.
124 RBPs can affect the levels of PHF21A.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PHF21A is not available on ENCORE database.

124 RBPs can affect the gene expression of PHF21A :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PHF21A	ENSG00000135365.11	568.73600	1243.19250	-1.12820	35.01240	33.28500	HepG2	PUS1
PHF21A	ENSG00000135365.11	507.69910	1544.75250	-1.60530	27.66440	26.51130	HepG2	SRSF1
PHF21A	ENSG00000135365.11	552.48120	1167.70670	-1.07970	27.31520	25.73800	HepG2	DKC1
PHF21A	ENSG00000135365.11	732.21000	1314.09680	-0.84370	21.66960	20.19530	HepG2	SUCLG1
PHF21A	ENSG00000135365.11	857.40000	1740.74240	-1.02170	21.91190	19.93440	HepG2	MSI2
PHF21A	ENSG00000135365.11	2252.14020	1472.57330	0.61290	20.42370	18.66800	K562	NSUN2
PHF21A	ENSG00000135365.11	2569.90730	1428.09520	0.84750	16.97490	16.01030	HepG2	SRFBP1
PHF21A	ENSG00000135365.11	780.44550	1484.04320	-0.92720	17.67180	15.61290	HepG2	HNRNPM
PHF21A	ENSG00000135365.11	1951.83210	1256.80000	0.63500	16.62890	15.47990	HepG2	SRSF9
PHF21A	ENSG00000135365.11	606.35140	1001.88100	-0.72450	15.17350	13.85160	HepG2	SMN1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 143 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PHF21A is not available on ENCORE database.

28 RBPs can affect the splicing of PHF21A :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	PHF21A	ENSG00000135365.11	chr11	-	46112005	46112132	46105716	46105853	46113733	46113774	-0.14600	0.00038	excluded	K562	AKAP8L
SE	PHF21A	ENSG00000135365.11	chr11	-	45956671	45956797	45954897	45955776	45957186	45957290	0.32900	0.00000	included	HepG2	HNRNPK
SE	PHF21A	ENSG00000135365.11	chr11	-	46112005	46112132	46105716	46105853	46113733	46113774	-0.18100	0.00001	excluded	K562	RBM15
A3SS	PHF21A	ENSG00000135365.11	chr11	-	45967390	45967649	45967390	45967554	45970436	45970497	0.28900	0.00000	longer	HepG2	SF3A3
A3SS	PHF21A	ENSG00000135365.11	chr11	-	45967390	45967649	45967390	45967554	45970436	45970497	0.23500	0.00105	longer	HepG2	HNRNPK
A3SS	PHF21A	ENSG00000135365.11	chr11	-	45967390	45967649	45967390	45967554	45970436	45970497	0.21700	0.00010	longer	K562	EFTUD2
A3SS	PHF21A	ENSG00000135365.11	chr11	-	45967390	45967649	45967390	45967554	45970436	45970497	0.20100	0.00002	longer	K562	SF3B4
A3SS	PHF21A	ENSG00000135365.11	chr11	-	45967390	45967649	45967390	45967554	45970436	45970497	0.38500	0.00000	longer	HepG2	NCBP2
A3SS	PHF21A	ENSG00000135365.11	chr11	-	45967390	45967649	45967390	45967554	45970436	45970497	0.13800	0.00001	longer	K562	SF3B1
A3SS	PHF21A	ENSG00000135365.11	chr11	-	45967390	45967649	45967390	45967554	45970436	45970524	0.29200	0.00008	longer	HepG2	SF3B4

Showing 1 to 10 of 51 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PHF21A

General Information

Functions

Localization

Domains (AlphaFold: PHF21A)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PHF21A is not avaliable on ENCORE database.

29 proteins are bound to PHF21A RNA:

eCLIP assay for PHF21A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PHF21A is not available on ENCORE database.

124 RBPs can affect the gene expression of PHF21A :

The Knockdown/knockout RNA-Seq assay for PHF21A is not available on ENCORE database.

28 RBPs can affect the splicing of PHF21A :

The Knockdown/knockout RNA-Seq assay for PHF21A is not avaliable on ENCORE database.