PECR

General Information

Gene Name : PECR
Gene ID : ENSG00000115425.13
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PECR)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PECR	ENSG00000115425.13	19.06	19.59	19.32	ENCSR000AEF
HepG2	PECR	ENSG00000115425.13	82.08	75.73	78.91	ENCSR985KAT
K562	PECR	ENSG00000115425.13	5.89	5.64	5.76	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PECR is not avaliable on ENCORE database.

Proteins bound to RNA

PECR RNA is bound by 22 proteins.

CanvasJS.com

eCLIP assay for PECR is not avaliable on ENCORE database.

22 proteins are bound to PECR RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	216896086	216896145	-	intron-Distal	6.97800	58.75482	HepG2	PTBP1
chr2	216926657	216926762	-	intron-Distal	3.35144	26.66398	HepG2	HNRNPL
chr2	216939105	216939160	-	intron-Distal	6.66280	20.34407	HepG2	PTBP1
chr2	216916187	216916228	-	5'-UTR,CDS,intron-Distal	4.01633	18.76581	HepG2	BCLAF1
chr2	216931159	216931227	-	CDS,intron-Distal	3.84312	17.06349	HepG2	BCLAF1
chr2	216916228	216916270	-	CDS,intron-Distal,intron-Proximal	3.43713	17.01386	HepG2	BCLAF1
chr2	216908618	216908697	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.31039	15.81591	HepG2	PPIG
chr2	216914048	216914088	-	5'-UTR,CDS,intron-Distal	3.44478	13.90696	HepG2	BCLAF1
chr2	216930035	216930072	-	CDS,intron-Distal	4.02437	13.87674	HepG2	BCLAF1
chr2	216896303	216896374	-	intron-Distal	5.77946	13.69751	HepG2	PTBP1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 71 entries

eCLIP assay for PECR is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PECR is not available on ENCORE database.
138 RBPs can affect the levels of PECR.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PECR is not available on ENCORE database.

138 RBPs can affect the gene expression of PECR :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PECR	ENSG00000115425.9	678.88070	4964.26740	-2.87040	102.16910	99.75780	HepG2	AKAP1
PECR	ENSG00000115425.9	4316.08320	1744.13460	1.30710	82.71090	80.91000	HepG2	SSB
PECR	ENSG00000115425.9	476.29840	1476.42110	-1.63220	72.52960	70.50590	HepG2	ACO1
PECR	ENSG00000115425.9	1504.21100	4573.41050	-1.60430	54.65550	53.14800	HepG2	SRSF1
PECR	ENSG00000115425.9	901.32630	4225.37790	-2.22900	51.54420	48.92010	HepG2	EIF4B
PECR	ENSG00000115425.9	1537.29300	4683.56880	-1.60720	49.03740	47.41730	HepG2	NELFE
PECR	ENSG00000115425.9	1564.08370	4381.70460	-1.48620	48.27520	46.40040	HepG2	SF3B4
PECR	ENSG00000115425.9	3490.30950	1863.34410	0.90540	47.89130	45.59920	HepG2	DAZAP1
PECR	ENSG00000115425.9	1378.52340	4378.47170	-1.66730	47.17040	44.73920	HepG2	FXR1
PECR	ENSG00000115425.9	1424.53900	3720.59220	-1.38500	46.04530	44.34400	HepG2	SRSF9
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 147 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PECR is not available on ENCORE database.

4 RBPs can affect the splicing of PECR :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	PECR	ENSG00000115425.9	chr2	-	216925432	216925513			216923617	216923699	216930034	216930200	0.05900	0.00000	0.00000	included	HepG2	SF3B4
SE	PECR	ENSG00000115425.9	chr2	-	216925432	216925513			216923617	216923699	216930034	216930200	0.19000	0.00000	0.00000	included	HepG2	HNRNPC
SE	PECR	ENSG00000115425.9	chr2	-	216923617	216923699			216916171	216916268	216930034	216930200	-0.05900	0.00001	0.00091	excluded	HepG2	SF3A3
SE	PECR	ENSG00000115425.9	chr2	-	216925432	216925513			216923617	216923699	216930034	216930200	0.81200	0.00014	0.00369	included	K562	HNRNPC
MXE	PECR	ENSG00000115425.9	chr2	-	216916171	216916268	216923617	216923699	216913985	216914096	216930034	216930200	-0.15700	0.00775	0.06646	2included	HepG2	SFPQ

Showing 1 to 5 of 5 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PECR

General Information

Functions

Localization

Domains (AlphaFold: PECR)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PECR is not avaliable on ENCORE database.

22 proteins are bound to PECR RNA:

eCLIP assay for PECR is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PECR is not available on ENCORE database.

138 RBPs can affect the gene expression of PECR :

The Knockdown/knockout RNA-Seq assay for PECR is not available on ENCORE database.

4 RBPs can affect the splicing of PECR :

The Knockdown/knockout RNA-Seq assay for PECR is not avaliable on ENCORE database.