CFDP1

General Information

Gene Name : CFDP1
Gene ID : ENSG00000153774.8
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CFDP1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CFDP1	ENSG00000153774.8	51.83	44.13	47.98	ENCSR000AEF
HepG2	CFDP1	ENSG00000153774.8	124.29	151.94	138.12	ENCSR985KAT
K562	CFDP1	ENSG00000153774.8	44.13	52.74	48.44	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CFDP1 is not avaliable on ENCORE database.

Proteins bound to RNA

CFDP1 RNA is bound by 29 proteins.

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eCLIP assay for CFDP1 is not avaliable on ENCORE database.

29 proteins are bound to CFDP1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr16	75428904	75429023	-	CDS,intron-Distal,intron-Proximal	5.54024	32.57438	HepG2	PRPF8
chr16	75412694	75412753	-	intron-Distal	5.46914	19.08391	HepG2	HNRNPM
chr16	75446431	75446520	-	CDS,intron-Distal,intron-Proximal	4.59367	17.13945	K562	UCHL5
chr16	75446520	75446608	-	CDS,intron-Distal,intron-Proximal	4.89583	17.00912	K562	UCHL5
chr16	75467235	75467324	-	5'-UTR,CDS,intron-Distal,intron-Proximal	6.90991	16.86373	K562	DDX3X
chr16	75446435	75446629	-	CDS,intron-Distal,intron-Proximal	4.37982	15.62408	K562	ZNF622
chr16	75467182	75467238	-	5'-UTR,CDS,intron-Distal	4.73114	14.93512	HepG2	GRWD1
chr16	75445758	75445820	-	CDS,intron-Distal	4.56039	14.21310	HepG2	BCLAF1
chr16	75445756	75445851	-	CDS,intron-Distal,intron-Proximal	4.88707	13.00886	K562	ZNF622
chr16	75427005	75427146	-	intron-Distal	3.88806	12.48042	HepG2	XPO5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 99 entries

eCLIP assay for CFDP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CFDP1 is not available on ENCORE database.
126 RBPs can affect the levels of CFDP1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CFDP1 is not available on ENCORE database.

126 RBPs can affect the gene expression of CFDP1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CFDP1	ENSG00000153774.4	1319.82020	2693.84750	-1.02930	35.44640	33.81000	HepG2	PUM1
CFDP1	ENSG00000153774.4	2134.74930	1062.67980	1.00630	35.55510	33.58290	K562	AGGF1
CFDP1	ENSG00000153774.4	1171.20940	2058.96140	-0.81390	26.75200	25.31420	HepG2	ACO1
CFDP1	ENSG00000153774.4	1423.19440	2505.60980	-0.81600	22.84710	21.29070	HepG2	SRSF5
CFDP1	ENSG00000153774.4	810.55540	1663.45410	-1.03720	22.14360	20.66700	HepG2	RPS19
CFDP1	ENSG00000153774.4	3032.96410	1610.55770	0.91310	19.96290	17.94780	HepG2	FUBP3
CFDP1	ENSG00000153774.4	1674.86840	2849.44810	-0.76660	18.45360	17.07610	HepG2	SUCLG1
CFDP1	ENSG00000153774.4	2183.50890	1096.56390	0.99360	18.36420	16.99840	K562	PUS1
CFDP1	ENSG00000153774.4	1920.51160	2913.77130	-0.60140	17.97140	16.99030	HepG2	SRFBP1
CFDP1	ENSG00000153774.4	702.18110	1382.78310	-0.97770	18.90030	16.84580	K562	CPSF6
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 149 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CFDP1 is not available on ENCORE database.

8 RBPs can affect the splicing of CFDP1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
MXE	CFDP1	ENSG00000153774.4	chr16	-	75338921	75339080	75428987	75429107	75327607	75327940	75445722	75445850	0.15900	0.00000	0.00324	1included	HepG2	TRA2A
MXE	CFDP1	ENSG00000153774.4	chr16	-	75338921	75339080	75428987	75429107	75327607	75327940	75445722	75445850	0.18900	0.00000	0.00000	1included	HepG2	AKAP1
MXE	CFDP1	ENSG00000153774.4	chr16	-	75338921	75339080	75428987	75429107	75327607	75327940	75445722	75445850	0.16500	0.00000	0.00017	1included	HepG2	XRCC6
SE	CFDP1	ENSG00000153774.4	chr16	-	75425295	75425406			75338921	75339080	75428987	75429109	0.12100	0.00003	0.00104	included	K562	HNRNPC
MXE	CFDP1	ENSG00000153774.4	chr16	-	75338921	75339080	75428987	75429107	75327607	75327940	75445722	75445850	0.11800	0.00006	0.00427	1included	HepG2	SF3A3
SE	CFDP1	ENSG00000153774.4	chr16	-	75425277	75425406			75338921	75339080	75428987	75429034	0.07100	0.00007	0.00122	included	K562	AQR
MXE	CFDP1	ENSG00000153774.4	chr16	-	75338921	75339080	75428987	75429107	75327607	75327940	75445722	75445850	-0.11200	0.00020	0.04635	2included	HepG2	DHX30
MXE	CFDP1	ENSG00000153774.4	chr16	-	75428987	75429107	75445722	75445850	75338921	75339080	75446432	75446652	-0.09700	0.00360	0.02329	2included	HepG2	U2AF2
SE	CFDP1	ENSG00000153774.4	chr16	-	75428987	75429132			75338911	75339080	75445722	75445850	-0.08100	0.00566	0.05144	excluded	K562	AQR

Showing 1 to 9 of 9 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CFDP1

General Information

Functions

Localization

Domains (AlphaFold: CFDP1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CFDP1 is not avaliable on ENCORE database.

29 proteins are bound to CFDP1 RNA:

eCLIP assay for CFDP1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CFDP1 is not available on ENCORE database.

126 RBPs can affect the gene expression of CFDP1 :

The Knockdown/knockout RNA-Seq assay for CFDP1 is not available on ENCORE database.

8 RBPs can affect the splicing of CFDP1 :

The Knockdown/knockout RNA-Seq assay for CFDP1 is not avaliable on ENCORE database.