CCDC26

General Information

Gene Name : CCDC26
Gene ID : ENSG00000229140.9
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CCDC26)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CCDC26	ENSG00000229140.9	0.74	0.61	0.68	ENCSR000AEF
HepG2	CCDC26	ENSG00000229140.9	0.00	0.00	0.00	ENCSR985KAT
K562	CCDC26	ENSG00000229140.9	48.45	54.62	51.53	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CCDC26 is not avaliable on ENCORE database.

Proteins bound to RNA

CCDC26 RNA is bound by 34 proteins.

CanvasJS.com

eCLIP assay for CCDC26 is not avaliable on ENCORE database.

34 proteins are bound to CCDC26 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr8	130495313	130495370	-	intron-Distal	5.22744	400.00000	K562	PTBP1
chr8	130579094	130579185	-	intron-Distal	6.38061	79.38262	K562	PTBP1
chr8	130495262	130495313	-	intron-Distal	6.35037	74.37813	K562	PTBP1
chr8	130393596	130393744	-	intron-Distal	4.60083	72.55323	K562	AGGF1
chr8	130537555	130537652	-	intron-Distal	4.95244	61.27238	K562	QKI
chr8	130512215	130512283	-	intron-Distal	4.78136	61.16722	K562	PTBP1
chr8	130583322	130583379	-	intron-Distal	8.33580	55.56277	K562	LSM11
chr8	130393597	130393625	-	intron-Distal	6.44425	46.04443	K562	HNRNPL
chr8	130495315	130495376	-	intron-Distal	5.72872	45.26210	K562	ILF3
chr8	130486919	130486974	-	intron-Distal	5.81741	44.86252	K562	TARDBP
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 329 entries

eCLIP assay for CCDC26 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CCDC26 is not available on ENCORE database.
95 RBPs can affect the levels of CCDC26.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CCDC26 is not available on ENCORE database.

95 RBPs can affect the gene expression of CCDC26 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CCDC26	ENSG00000229140.4	443.34690	1304.24610	-1.55670	55.14560	52.60030	K562	DDX47
CCDC26	ENSG00000229140.4	308.94120	1223.39720	-1.98550	48.05560	45.88250	K562	AQR
CCDC26	ENSG00000229140.4	392.20200	932.17670	-1.24900	24.50010	21.72380	K562	MATR3
CCDC26	ENSG00000229140.4	157.52870	662.43700	-2.07220	17.71960	15.65150	K562	RPS19
CCDC26	ENSG00000229140.4	943.55560	1565.86870	-0.73080	15.26890	13.17140	K562	EIF4G2
CCDC26	ENSG00000229140.4	274.85430	574.57940	-1.06380	13.67280	11.96040	K562	POLR2G
CCDC26	ENSG00000229140.4	496.96270	866.31790	-0.80180	12.96930	11.58870	K562	EIF2S2
CCDC26	ENSG00000229140.4	378.07900	749.11420	-0.98650	10.96960	9.31760	K562	PCBP3
CCDC26	ENSG00000229140.4	515.58850	889.61110	-0.78700	10.44480	9.08540	K562	SRSF1
CCDC26	ENSG00000229140.4	330.03320	619.65570	-0.90890	11.38820	8.96700	K562	NCBP2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 95 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CCDC26 is not available on ENCORE database.

12 RBPs can affect the splicing of CCDC26 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CCDC26	ENSG00000229140.4	chr8	-	130400290	130400364			130382552	130382623	130587127	130587262	-0.37700	0.00000	0.00037	excluded	K562	HNRNPM
SE	CCDC26	ENSG00000229140.4	chr8	-	130563060	130563172			130382552	130382623	130587127	130587262	0.19900	0.00000	0.00011	included	K562	HNRNPU
MXE	CCDC26	ENSG00000229140.4	chr8	-	130382552	130382623	130400290	130400364	130363936	130365226	130587127	130587262	0.08900	0.00000	0.00018	1included	K562	SRSF1
MXE	CCDC26	ENSG00000229140.4	chr8	-	130382552	130382623	130567049	130567187	130363936	130365226	130587127	130587262	0.06000	0.00001	0.00035	1included	K562	SRSF1
MXE	CCDC26	ENSG00000229140.4	chr8	-	130400290	130400364	130585363	130585460	130382552	130382623	130587127	130587262	0.51100	0.00017	0.01625	1included	K562	UTP18
MXE	CCDC26	ENSG00000229140.4	chr8	-	130400290	130400364	130455847	130455998	130382552	130382623	130587127	130587262	0.37300	0.00020	0.01229	1included	K562	AKAP8L
MXE	CCDC26	ENSG00000229140.4	chr8	-	130382552	130382623	130400290	130400364	130363936	130365226	130587127	130587262	0.06300	0.00027	0.04467	1included	K562	PCBP1
SE	CCDC26	ENSG00000229140.4	chr8	-	130411776	130411930			130382552	130382623	130587127	130587237	-0.23800	0.00040	0.00784	excluded	K562	PUS1
SE	CCDC26	ENSG00000229140.4	chr8	-	130411776	130411930			130363936	130365226	130587127	130587237	-0.22800	0.00058	0.07483	excluded	K562	LARP4
SE	CCDC26	ENSG00000229140.4	chr8	-	130411759	130411930			130382552	130382623	130587127	130587237	-0.22300	0.00065	0.02236	excluded	K562	AKAP8L

Showing 1 to 10 of 22 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CCDC26

General Information

Functions

Localization

Domains (AlphaFold: CCDC26)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CCDC26 is not avaliable on ENCORE database.

34 proteins are bound to CCDC26 RNA:

eCLIP assay for CCDC26 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CCDC26 is not available on ENCORE database.

95 RBPs can affect the gene expression of CCDC26 :

The Knockdown/knockout RNA-Seq assay for CCDC26 is not available on ENCORE database.

12 RBPs can affect the splicing of CCDC26 :

The Knockdown/knockout RNA-Seq assay for CCDC26 is not avaliable on ENCORE database.