HSPA9

General Information

Gene Name : HSPA9
Gene ID : ENSG00000113013.13
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: HSPA9)

Not Available

Antibody Validation

Cell Signaling Technology: 3593S

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	HSPA9	ENSG00000113013.13	283.62	242.89	263.25	ENCSR000AEF
HepG2	HSPA9	ENSG00000113013.13	224.83	314.50	269.67	ENCSR985KAT
K562	HSPA9	ENSG00000113013.13	342.52	371.39	356.95	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
HSPA9		3593S	2			Submitted, ENCORE2	BGHcLV47-41, Experimented, ENCORE2	BGKcLV42-43, Submitted, ENCORE2

KD RNA-Seq

GeneName	Cell_Line	Method	Sample_reps	Control_reps	KD%	Status	Project
HSPA9	K562	CRISPR	HSPA9-BGKcLV42-43,HSPA9-BGKcLV42-44	NT-BGKcLV42-1,NT-BGKcLV42-2	62.5,65.3	Submitting	ENCORE2
HSPA9	HepG2	CRISPR	BGHcLV45-43,BGHcLV45-44	BGHcLV45-1,BGHcLV45-2	0.0,0.0	NotSatisfied	ENCORE2
HSPA9	HepG2	CRISPR	BGHcLV47-41,BGHcLV47-42	BGHcLV47-1,BGHcLV47-2	71.4,82.9	Sequenced	ENCORE2

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
HSPA9	Product_ID: 3593S Lot_ID: 2 Source: Cell Signaling Technology Target Name: HSPA9-human

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for HSPA9 is not avaliable on ENCORE database.

Proteins bound to RNA

HSPA9 RNA is bound by 64 proteins.

CanvasJS.com

eCLIP assay for HSPA9 is not avaliable on ENCORE database.

64 proteins are bound to HSPA9 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr5	137896731	137896743	-	intron-Distal	6.91680	400.00000	HepG2	NOLC1
chr5	137896736	137896782	-	intron-Distal	4.38747	400.00000	K562	SMNDC1
chr5	137896730	137896744	-	intron-Distal	5.26029	400.00000	K562	AATF
chr5	137896768	137896787	-	intron-Distal	4.94080	400.00000	HepG2	NIP7
chr5	137896728	137896736	-	intron-Distal	4.63970	400.00000	K562	SMNDC1
chr5	137896769	137896779	-	intron-Distal	3.79250	400.00000	K562	PHF6
chr5	137896749	137896762	-	intron-Distal	4.33828	400.00000	HepG2	DKC1
chr5	137896762	137896785	-	intron-Distal	6.93349	400.00000	HepG2	NOLC1
chr5	137896730	137896749	-	intron-Distal	4.32671	400.00000	HepG2	DKC1
chr5	137896743	137896748	-	intron-Distal	7.25326	400.00000	HepG2	NOLC1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 307 entries

eCLIP assay for HSPA9 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for HSPA9 is not available on ENCORE database.
123 RBPs can affect the levels of HSPA9.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for HSPA9 is not available on ENCORE database.

123 RBPs can affect the gene expression of HSPA9 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
HSPA9	ENSG00000113013.8	13085.46690	19704.10920	-0.59050	49.26820	46.81440	K562	NSUN2
HSPA9	ENSG00000113013.8	13605.71190	20892.70700	-0.61880	28.64800	26.64850	K562	UPF1
HSPA9	ENSG00000113013.8	11572.42730	17734.29050	-0.61590	28.39430	26.23430	K562	MTPAP
HSPA9	ENSG00000113013.8	17616.20820	29959.65930	-0.76610	28.12780	26.15000	K562	RBM15
HSPA9	ENSG00000113013.8	16737.90220	30748.88860	-0.87740	20.47080	19.02360	K562	PUS1
HSPA9	ENSG00000113013.8	6368.81050	9230.57040	-0.53540	17.52660	16.37720	HepG2	PTBP1
HSPA9	ENSG00000113013.8	14921.04300	10190.61280	0.55000	16.92980	15.54510	K562	FXR1
HSPA9	ENSG00000113013.8	3986.58650	7398.29800	-0.89200	18.11230	15.47270	HepG2	RPS5
HSPA9	ENSG00000113013.8	7542.60370	10075.89840	-0.41780	16.81480	15.27880	HepG2	HNRNPL
HSPA9	ENSG00000113013.8	14706.40100	24138.26270	-0.71490	16.82760	14.92260	K562	GRSF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 158 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for HSPA9 is not available on ENCORE database.

11 RBPs can affect the splicing of HSPA9 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	is_included	Cell Line	Affected by RBP
SE	HSPA9	ENSG00000113013.8	chr5	-	137909756	137909815	137909465	137909539	137910926	137911029	-0.14000	excluded	K562	SF3B4
SE	HSPA9	ENSG00000113013.8	chr5	-	137895552	137895780	137894241	137894346	137897268	137897478	-0.11300	excluded	K562	SF3B4
SE	HSPA9	ENSG00000113013.8	chr5	-	137909756	137909815	137909451	137909539	137910926	137911100	-0.13800	excluded	K562	AQR
SE	HSPA9	ENSG00000113013.8	chr5	-	137903337	137903411	137903143	137903250	137904613	137904820	-0.19600	excluded	K562	AQR
SE	HSPA9	ENSG00000113013.8	chr5	-	137902314	137902463	137897268	137897478	137902689	137902852	-0.08900	excluded	K562	AQR
SE	HSPA9	ENSG00000113013.8	chr5	-	137909756	137909815	137909451	137909539	137910926	137911133	-0.11500	excluded	HepG2	SF3A3
SE	HSPA9	ENSG00000113013.8	chr5	-	137909756	137909815	137909465	137909539	137910926	137911029	-0.09900	excluded	HepG2	SF3B4
SE	HSPA9	ENSG00000113013.8	chr5	-	137895552	137895771	137894241	137894346	137897268	137897478	-0.05200	excluded	K562	HNRNPU
SE	HSPA9	ENSG00000113013.8	chr5	-	137895552	137895780	137894241	137894346	137897268	137897478	-0.07000	excluded	K562	SF3B1
A3SS	HSPA9	ENSG00000113013.8	chr5	-	137909451	137909635	137909451	137909539	137909756	137909815	0.07900	longer	K562	AQR

Showing 1 to 10 of 58 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

HSPA9

General Information

Functions

Localization

Domains (AlphaFold: HSPA9)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for HSPA9 is not avaliable on ENCORE database.

64 proteins are bound to HSPA9 RNA:

eCLIP assay for HSPA9 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for HSPA9 is not available on ENCORE database.

123 RBPs can affect the gene expression of HSPA9 :

The Knockdown/knockout RNA-Seq assay for HSPA9 is not available on ENCORE database.

11 RBPs can affect the splicing of HSPA9 :

The Knockdown/knockout RNA-Seq assay for HSPA9 is not avaliable on ENCORE database.