CSNK1E

General Information

Gene Name : CSNK1E
Gene ID : ENSG00000213923.11
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CSNK1E)

Not Available

Antibody Validation

Bethyl Labs: A302-135A

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CSNK1E	ENSG00000213923.11	33.05	53.28	43.16	ENCSR000AEF
HepG2	CSNK1E	ENSG00000213923.11	63.07	36.97	50.02	ENCSR985KAT
K562	CSNK1E	ENSG00000213923.11	52.97	43.06	48.02	ENCSR000AEO

Assays

1 Released experiments are available on ENCORE database.

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Linked Antibody	Controls	Method	Note
knockdown followed by RNA-seq	CSNK1E-BGKcLV28-K562	ENCSR251LKQ	CSNK1E	K562	Released		ENCSR220DTX	CRISPR	KD% = 84.7,85.2

eCLIP

No eCLIP experiment available

Antibody Validation

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
CSNK1E	ENCAB344UBI	A302-135A	1			Released, ENCODE4		BGKcLV28-45, Released, ENCODE4

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project	Note
CSNK1E	K562	CRISPR	ENCSR251LKQ	ENCSR220DTX	CSNK1E-BGKcLV28-45,CSNK1E-BGKcLV28-46	NT-BGKcLV28-1,NT-BGKcLV28-2	84.7,85.2	Released	ENCODE4
CSNK1E	HepG2	CRISPR			BGHcLV29-45,BGHcLV29-46	BGHcLV29-1,BGHcLV29-2	no clear band,	NotSatisfied	ENCODE4

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
CSNK1E	Product_ID: A302-135A Lot_ID: 1 Source: Bethyl Labs Target Name: CSNK1E-human

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CSNK1E is not avaliable on ENCORE database.

Proteins bound to RNA

CSNK1E RNA is bound by 45 proteins.

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eCLIP assay for CSNK1E is not avaliable on ENCORE database.

45 proteins are bound to CSNK1E RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr22	38686719	38686809	-	3'-UTR,intron-Distal	5.19054	35.84521	K562	PUM2
chr22	38690067	38690165	-	3'-UTR,CDS,intron-Distal,intron-Proximal	3.69010	33.34983	HepG2	PRPF8
chr22	38692086	38692205	-	intron-Distal,intron-Proximal	4.98512	32.95380	HepG2	CSTF2T
chr22	38692078	38692211	-	intron-Distal,intron-Proximal	5.96172	32.81345	HepG2	CSTF2
chr22	38691770	38691894	-	intron-Distal	4.95553	21.30826	HepG2	CSTF2T
chr22	38692046	38692216	-	3'-UTR,intron-Distal,intron-Proximal,polyA_site	5.37918	20.35012	K562	CSTF2T
chr22	38689372	38689412	-	intron-Distal,intron-Proximal	4.58162	18.72254	HepG2	SF3B4
chr22	38690525	38690637	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.18998	17.25791	HepG2	SF3B4
chr22	38713270	38713402	-	5'-UTR,intron-Distal	4.10958	15.61418	K562	ZNF622
chr22	38689576	38689622	-	intron-Distal	6.74528	14.88148	HepG2	XPO5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 154 entries

eCLIP assay for CSNK1E is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CSNK1E is not available on ENCORE database.
110 RBPs can affect the levels of CSNK1E.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CSNK1E is not available on ENCORE database.

110 RBPs can affect the gene expression of CSNK1E :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CSNK1E	ENSG00000213923.6	3686.75370	2102.70240	0.81000	31.24110	29.42090	K562	AGGF1
CSNK1E	ENSG00000213923.6	922.30390	1747.50950	-0.92200	28.51700	27.25980	HepG2	SSB
CSNK1E	ENSG00000213923.6	1039.94820	1951.47990	-0.90810	28.40690	27.24220	HepG2	SRSF1
CSNK1E	ENSG00000213923.6	3378.67570	2012.72790	0.74720	28.31750	27.15300	HepG2	SRFBP1
CSNK1E	ENSG00000213923.6	1051.43360	1754.09020	-0.73840	15.49950	14.33390	HepG2	TAF15
CSNK1E	ENSG00000213923.6	1530.77920	1019.15490	0.58680	12.88780	11.64950	HepG2	SAFB2
CSNK1E	ENSG00000213923.6	605.05710	1096.81580	-0.85820	12.84770	11.63730	K562	HNRNPC
CSNK1E	ENSG00000213923.6	2480.38310	1618.88270	0.61550	12.07560	10.53180	HepG2	NOL12
CSNK1E	ENSG00000213923.6	1114.19650	2007.55290	-0.84940	11.48910	10.29520	HepG2	DDX3X
CSNK1E	ENSG00000213923.6	2586.94170	1782.02920	0.53760	10.72390	9.85010	HepG2	RBM22
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 124 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CSNK1E is not available on ENCORE database.

4 RBPs can affect the splicing of CSNK1E :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CSNK1E	ENSG00000213923.6	chr22	-	38691392	38691453	38690347	38690540	38694790	38694939	0.49600	0.00000	0.00000	included	HepG2	HNRNPK
A3SS	CSNK1E	ENSG00000213923.6	chr22	-	38695960	38696192	38695960	38696070	38696728	38696957	0.09000	0.00000	0.00000	longer	K562	AQR
SE	CSNK1E	ENSG00000213923.6	chr22	-	38691392	38691453	38690347	38690540	38694790	38694939	0.11500	0.00001	0.00097	included	K562	FXR1
A3SS	CSNK1E	ENSG00000213923.6	chr22	-	38698865	38699036	38698865	38699014	38699142	38699253	0.07300	0.00005	0.00044	longer	K562	AQR
SE	CSNK1E	ENSG00000213923.6	chr22	-	38691392	38691453	38690347	38690540	38694790	38694939	0.05500	0.00093	0.04541	included	HepG2	PCBP1

Showing 1 to 5 of 5 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CSNK1E

General Information

Functions

Localization

Domains (AlphaFold: CSNK1E)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CSNK1E is not avaliable on ENCORE database.

45 proteins are bound to CSNK1E RNA:

eCLIP assay for CSNK1E is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CSNK1E is not available on ENCORE database.

110 RBPs can affect the gene expression of CSNK1E :

The Knockdown/knockout RNA-Seq assay for CSNK1E is not available on ENCORE database.

4 RBPs can affect the splicing of CSNK1E :

The Knockdown/knockout RNA-Seq assay for CSNK1E is not avaliable on ENCORE database.