ZBED3

General Information

Gene Name       : ZBED3
Gene ID             : ENSG00000132846.5
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ZBED3)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ZBED3ENSG00000132846.59.188.618.89ENCSR000AEF
HepG2ZBED3ENSG00000132846.56.266.656.46ENCSR985KAT
K562ZBED3ENSG00000132846.50.010.010.01ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ZBED3 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ZBED3 RNA is bound by 7 proteins.  







eCLIP assay for ZBED3 is not avaliable on ENCORE database.





7 proteins are bound to ZBED3 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr57637017076370243-3'-UTR,intron-Distal3.524013.84724HepG2IGF2BP1
chr57637011576370202-3'-UTR,intron-Distal5.6317410.46790HepG2PCBP2
chr57636994176370005-3'-UTR,intron-Distal3.864456.31999HepG2PCBP2
chr57637075276370805-3'-UTR,intron-Distal4.042033.45317HepG2HNRNPL
chr57637070576370752-3'-UTR,intron-Distal3.434974.64467HepG2HNRNPL
chr57637068276370843-3'-UTR,intron-Distal5.0098012.19689HepG2QKI
chr57637201276372138-3'-UTR,intron-Distal5.000909.62214HepG2PCBP2
chr57638285076382955-5'-UTR,intron-Distal3.004666.15266HepG2PRPF8
chr57637303676373159-CDS,intron-Distal,intron-Proximal5.265825.53140HepG2GRSF1
chr57637629976376306-intron-Distal5.15477400.00000HepG2DKC1
chr57637635576376372-intron-Distal5.44319400.00000HepG2DKC1
chr57637625876376291-intron-Distal4.28990400.00000HepG2DKC1
chr57637634976376353-intron-Distal5.38598400.00000HepG2DKC1
chr57637637276376396-intron-Distal5.77370400.00000HepG2DKC1
chr57637629676376299-intron-Distal5.02076400.00000HepG2DKC1
chr57637632276376330-intron-Distal5.61809400.00000HepG2DKC1
chr57637633076376349-intron-Distal5.54135400.00000HepG2DKC1
chr57637630676376321-intron-Distal5.50385400.00000HepG2DKC1
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ZBED3 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ZBED3 is not available on ENCORE database.

  • 100 RBPs can affect the levels of ZBED3.  








The Knockdown/knockout RNA-Seq assay for ZBED3 is not available on ENCORE database.





100 RBPs can affect the gene expression of ZBED3 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ZBED3ENSG00000132846.51868.73850838.653401.1558010.804209.14340HepG2ABCF1
ZBED3ENSG00000132846.5228.31660324.95680-0.509203.412202.74870HepG2ACO1
ZBED3ENSG00000132846.5597.96300361.432100.726206.403604.96470HepG2ADAR
ZBED3ENSG00000132846.5220.36530421.75600-0.936506.331405.56390HepG2AKAP1
ZBED3ENSG00000132846.5488.02590326.507400.579705.406504.36740HepG2AKAP8L
ZBED3ENSG00000132846.51090.43670757.521800.525402.912801.47190HepG2ATP5C1
ZBED3ENSG00000132846.5350.44040778.26830-1.1511022.5242020.90960HepG2AUH
ZBED3ENSG00000132846.5201.14760337.97640-0.748704.742003.59270HepG2BCLAF1
ZBED3ENSG00000132846.5746.927701320.84550-0.8224011.6556010.54070HepG2BOP1
ZBED3ENSG00000132846.5610.95030331.539300.881804.943003.92580HepG2CIRBP
ZBED3ENSG00000132846.5448.35610324.914800.464503.820403.06270HepG2CKAP4
ZBED3ENSG00000132846.5164.62030266.40470-0.694502.775802.00970HepG2CNOT7
ZBED3ENSG00000132846.5254.41160370.63430-0.542803.682202.50890HepG2YBX3
ZBED3ENSG00000132846.5216.10280410.49340-0.925609.498208.44210HepG2CELF1
ZBED3ENSG00000132846.5486.40660300.551700.694408.430507.11360HepG2DDX19B
ZBED3ENSG00000132846.5575.40400367.960300.644905.362904.45060HepG2DDX21
ZBED3ENSG00000132846.5680.73610360.127800.9185011.468009.65190HepG2DDX24
ZBED3ENSG00000132846.5208.36010382.49590-0.876405.983404.89960HepG2DDX55
ZBED3ENSG00000132846.5885.627101377.02080-0.636803.381802.30430HepG2DDX59
ZBED3ENSG00000132846.5188.14240347.07390-0.883405.384004.54860HepG2DDX6
ZBED3ENSG00000132846.5660.69870310.903001.0874018.0972016.70710HepG2DKC1
ZBED3ENSG00000132846.5778.83120358.291001.1201013.0939011.31880HepG2EEF2
ZBED3ENSG00000132846.5200.51710333.61830-0.734504.210403.48700HepG2EIF2S1
ZBED3ENSG00000132846.51126.16880636.565200.822907.588905.76780HepG2EIF2S2
ZBED3ENSG00000132846.5547.85080290.804700.913608.025206.56120HepG2EIF3D
ZBED3ENSG00000132846.5514.29090347.512700.565404.515403.17340HepG2EIF3G
ZBED3ENSG00000132846.5575.04750368.671700.641204.334203.53790HepG2EIF4A3
ZBED3ENSG00000132846.5958.85030358.983601.4173016.3877014.80910HepG2EIF4B
ZBED3ENSG00000132846.51282.86970726.806700.819606.298804.72530HepG2ESF1
ZBED3ENSG00000132846.5498.63580317.566300.650805.480804.30350HepG2EWSR1
ZBED3ENSG00000132846.5226.24860350.67950-0.632204.070902.72200HepG2FASTKD2
ZBED3ENSG00000132846.5502.50160372.021700.433602.280201.64980HepG2FXR1
ZBED3ENSG00000132846.5696.79500366.379000.927309.617807.95800HepG2G3BP2
ZBED3ENSG00000132846.5916.10450258.909901.8230035.7074033.07970HepG2GEMIN5
ZBED3ENSG00000132846.51939.394401374.658700.496404.264803.48200HepG2GPKOW
ZBED3ENSG00000132846.5419.28140246.622600.765504.297602.91420HepG2GRSF1
ZBED3ENSG00000132846.5336.29010225.322200.577602.661801.32350HepG2HNRNPA0
ZBED3ENSG00000132846.51270.00490367.447501.7891012.3827011.17470HepG2HNRNPA1
ZBED3ENSG00000132846.5300.92260405.62470-0.430802.611901.70090HepG2HNRNPA2B1
ZBED3ENSG00000132846.5344.06650220.025100.644903.372401.82370HepG2HNRNPAB
ZBED3ENSG00000132846.5533.29320406.003700.393303.027902.39580HepG2HNRNPU
ZBED3ENSG00000132846.5518.82480350.757200.564703.474002.72550HepG2IGF2BP2
ZBED3ENSG00000132846.5501.29430253.896500.981308.058205.93300HepG2KHDRBS1
ZBED3ENSG00000132846.5541.41350340.768400.667802.800701.57810HepG2LIN28B
ZBED3ENSG00000132846.5554.63810372.151800.575603.777803.01150HepG2MAGOH
ZBED3ENSG00000132846.5551.36210374.227000.559003.250902.57100HepG2MATR3
ZBED3ENSG00000132846.5920.98670685.915100.425102.161201.44190HepG2MSI2
ZBED3ENSG00000132846.5971.56280426.085501.189103.830201.66340HepG2NUFIP2
ZBED3ENSG00000132846.51050.60120776.742300.435603.609101.76290HepG2NUP35
ZBED3ENSG00000132846.5478.74240217.331801.139307.745805.19260HepG2PA2G4
ZBED3ENSG00000132846.5110.67310243.50970-1.137705.690104.38270HepG2PABPC1
ZBED3ENSG00000132846.5540.18050401.889800.426503.412602.48120HepG2PARN
ZBED3ENSG00000132846.5475.02120240.496900.981909.415807.29510HepG2PKM
ZBED3ENSG00000132846.5688.81400362.125000.927509.063207.77710HepG2PPIL4
ZBED3ENSG00000132846.5811.767301013.91180-0.320803.289302.45310HepG2PRPF4
ZBED3ENSG00000132846.51141.07480390.566601.5467019.0312016.38370HepG2PRPF6
ZBED3ENSG00000132846.5290.73810384.02100-0.401502.260701.75630HepG2PTBP1
ZBED3ENSG00000132846.5590.85010417.772400.500002.991702.37610HepG2PUF60
ZBED3ENSG00000132846.5805.61960443.496700.8611017.6988016.46620HepG2PUM1
ZBED3ENSG00000132846.5450.49420330.993800.444603.511802.83660HepG2PUS1
ZBED3ENSG00000132846.5252.59050415.87480-0.719305.747004.89440HepG2QKI
ZBED3ENSG00000132846.5103.27570358.49290-1.7954012.6467011.23490HepG2RAVER1
ZBED3ENSG00000132846.5576.41980802.96930-0.478203.831702.84120HepG2RBM15
ZBED3ENSG00000132846.5748.24410391.676100.933705.673104.23780HepG2RBM27
ZBED3ENSG00000132846.5597.56130318.061400.909705.242703.77440HepG2RCC2
ZBED3ENSG00000132846.5714.33410427.367000.741009.108908.23010HepG2NELFE
ZBED3ENSG00000132846.5624.81830398.055100.650407.379406.44530HepG2RECQL
ZBED3ENSG00000132846.5719.18170897.00230-0.318801.990901.40010HepG2RPLP0
ZBED3ENSG00000132846.5640.72260283.013601.1787016.0215014.71270HepG2RPS19
ZBED3ENSG00000132846.5453.73910267.559000.761904.655103.61970HepG2RPS3A
ZBED3ENSG00000132846.5264.45210361.57160-0.451303.020902.35320HepG2SAFB2
ZBED3ENSG00000132846.5387.34200251.952100.620403.292801.86770HepG2SART3
ZBED3ENSG00000132846.5460.10570283.972700.696104.895803.65730HepG2SERBP1
ZBED3ENSG00000132846.51339.73740414.812001.691307.603705.19230HepG2SF1
ZBED3ENSG00000132846.51199.53470401.883701.577502.799901.34270HepG2SFPQ
ZBED3ENSG00000132846.5602.57130421.666000.514905.645704.77910HepG2SMN1
ZBED3ENSG00000132846.5507.348601444.80880-1.5098017.1051015.20310HepG2SNRNP70
ZBED3ENSG00000132846.5532.83130843.52800-0.662809.887509.09910HepG2SRFBP1
ZBED3ENSG00000132846.5862.62790417.305001.0475020.4415019.40650HepG2SRSF1
ZBED3ENSG00000132846.5629.81520818.09850-0.377303.793302.99750HepG2SRSF7
ZBED3ENSG00000132846.5202.05730339.50860-0.748706.287705.51540HepG2SRSF9
ZBED3ENSG00000132846.51324.81870732.398700.8550021.5304020.39600HepG2SSB
ZBED3ENSG00000132846.5826.93140469.118400.8177011.3715010.25560HepG2SUCLG1
ZBED3ENSG00000132846.51168.03150702.889800.732606.023204.06790HepG2SUGP2
ZBED3ENSG00000132846.51838.666601278.518200.524105.760504.77000HepG2TARDBP
ZBED3ENSG00000132846.51011.33950681.630200.569102.295701.32450HepG2TBRG4
ZBED3ENSG00000132846.5179.13580255.17410-0.510402.695401.71000HepG2TFIP11
ZBED3ENSG00000132846.5612.00170394.555300.633204.008103.42940HepG2TIAL1
ZBED3ENSG00000132846.5604.82870360.051800.748204.642002.77060HepG2TRA2A
ZBED3ENSG00000132846.5394.07420231.047900.770204.871202.81570HepG2TROVE2
ZBED3ENSG00000132846.5549.24390408.166900.428202.955302.04890HepG2TUFM
ZBED3ENSG00000132846.51144.49470724.763400.659005.822004.92690HepG2U2AF1
ZBED3ENSG00000132846.5256.59050432.05200-0.751704.088503.06030HepG2UBE2L3
ZBED3ENSG00000132846.5135.89720224.89020-0.726703.831202.93910HepG2UCHL5
ZBED3ENSG00000132846.5506.27070748.35830-0.563807.154606.11890HepG2UPF1
ZBED3ENSG00000132846.51132.98310722.510100.6489011.5514010.46080HepG2UTP3
ZBED3ENSG00000132846.5796.96100394.300601.015109.033707.23750HepG2XRCC6
ZBED3ENSG00000132846.5583.66040374.793900.638903.868703.01980HepG2XRN2
ZBED3ENSG00000132846.5600.20900823.05050-0.455505.967705.24430HepG2ZNF622
ZBED3ENSG00000132846.510.632200.654704.021502.055101.33880K562PCBP3
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ZBED3 is not available on ENCORE database.






No RBPs affect the alternative splcing events of ZBED3 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for ZBED3 is not avaliable on ENCORE database.