TPT1

General Information

Gene Name : TPT1
Gene ID : ENSG00000133112.16
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TPT1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TPT1	ENSG00000133112.16	4153.89	4032.10	4092.99	ENCSR000AEF
HepG2	TPT1	ENSG00000133112.16	3222.28	4235.76	3729.02	ENCSR985KAT
K562	TPT1	ENSG00000133112.16	1599.11	1686.73	1642.92	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TPT1 is not avaliable on ENCORE database.

Proteins bound to RNA

TPT1 RNA is bound by 26 proteins.

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eCLIP assay for TPT1 is not avaliable on ENCORE database.

26 proteins are bound to TPT1 RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr13	45911463	45911471	-	3'-UTR,intron-Distal	3.77135	400.00000	K562	YBX3
chr13	45911612	45911643	-	3'-UTR,CDS,intron-Distal	3.41967	400.00000	K562	SMNDC1
chr13	45911471	45911477	-	3'-UTR,intron-Distal	3.68004	400.00000	K562	YBX3
chr13	45911495	45911498	-	3'-UTR,intron-Distal	3.46139	400.00000	K562	YBX3
chr13	45911482	45911490	-	3'-UTR,intron-Distal	3.70467	400.00000	K562	YBX3
chr13	45911490	45911495	-	3'-UTR,intron-Distal	3.65905	400.00000	K562	YBX3
chr13	45911432	45911460	-	3'-UTR,intron-Distal,intron-Proximal	3.78146	400.00000	K562	YBX3
chr13	45911518	45911523	-	3'-UTR,intron-Distal,intron-Proximal	3.58652	400.00000	K562	YBX3
chr13	45911460	45911463	-	3'-UTR,intron-Distal	3.47900	400.00000	K562	YBX3
chr13	45911384	45911393	-	3'-UTR,intron-Distal,intron-Proximal	4.07812	400.00000	K562	YBX3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 146 entries

eCLIP assay for TPT1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TPT1 is not available on ENCORE database.
144 RBPs can affect the levels of TPT1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TPT1 is not available on ENCORE database.

144 RBPs can affect the gene expression of TPT1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TPT1	ENSG00000133112.12	24293.24520	77292.14650	-1.66980	232.38400	229.93190	HepG2	SRSF1
TPT1	ENSG00000133112.12	30257.67210	79154.64030	-1.38740	136.87580	134.60350	HepG2	NELFE
TPT1	ENSG00000133112.12	27276.45610	71123.72890	-1.38270	125.65570	123.38140	HepG2	PTBP1
TPT1	ENSG00000133112.12	19600.43440	79589.52870	-2.02170	72.92790	69.98010	HepG2	NCBP2
TPT1	ENSG00000133112.12	33267.69060	77030.70050	-1.21130	68.31520	66.02230	HepG2	QKI
TPT1	ENSG00000133112.12	36291.01060	69898.79930	-0.94570	63.91040	61.71480	HepG2	PCBP1
TPT1	ENSG00000133112.12	39582.45280	74050.61950	-0.90370	62.02260	59.93470	HepG2	SF3B4
TPT1	ENSG00000133112.12	45185.20080	26169.81220	0.78780	57.22640	54.90360	HepG2	SAFB2
TPT1	ENSG00000133112.12	21882.58670	77756.99090	-1.82920	56.34790	53.83640	HepG2	MATR3
TPT1	ENSG00000133112.12	11861.30170	27997.21380	-1.23900	49.63960	47.64350	HepG2	RPS19
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 179 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TPT1 is not available on ENCORE database.

3 RBPs can affect the splicing of TPT1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	TPT1	ENSG00000133112.12	chr13	-	45914858	45914920	45914128	45914319	45915176	45915318	0.18200	0.00000	0.00000	included	K562	CPSF6
A3SS	TPT1	ENSG00000133112.12	chr13	-	45914240	45914418	45914240	45914319	45915176	45915290	0.32400	0.00000	0.00000	longer	K562	AQR
A3SS	TPT1	ENSG00000133112.12	chr13	-	45911312	45911688	45911312	45911538	45912794	45913019	-0.35500	0.00000	0.00000	shorter	K562	AQR
A3SS	TPT1	ENSG00000133112.12	chr13	-	45914437	45914611	45914437	45914499	45914846	45915293	-0.59700	0.00000	0.00000	shorter	K562	AQR
RI	TPT1	ENSG00000133112.12	chr13	-	45914846	45915293	45914846	45914955	45915176	45915293	0.39200	0.00000	0.00000	included	K562	AQR
RI	TPT1	ENSG00000133112.12	chr13	-	45914846	45915293	45914846	45914955	45915176	45915293	0.26000	0.00453	0.02854	included	K562	PUS1

Showing 1 to 6 of 6 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TPT1

General Information

Functions

Localization

Domains (AlphaFold: TPT1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TPT1 is not avaliable on ENCORE database.

26 proteins are bound to TPT1 RNA:

eCLIP assay for TPT1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TPT1 is not available on ENCORE database.

144 RBPs can affect the gene expression of TPT1 :

The Knockdown/knockout RNA-Seq assay for TPT1 is not available on ENCORE database.

3 RBPs can affect the splicing of TPT1 :

The Knockdown/knockout RNA-Seq assay for TPT1 is not avaliable on ENCORE database.