TPM1

General Information

Gene Name : TPM1
Gene ID : ENSG00000140416.20
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TPM1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TPM1	ENSG00000140416.20	2.46	1.84	2.15	ENCSR000AEF
HepG2	TPM1	ENSG00000140416.20	89.12	94.86	91.99	ENCSR985KAT
K562	TPM1	ENSG00000140416.20	28.92	33.28	31.10	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TPM1 is not avaliable on ENCORE database.

Proteins bound to RNA

TPM1 RNA is bound by 24 proteins.

CanvasJS.com

eCLIP assay for TPM1 is not avaliable on ENCORE database.

24 proteins are bound to TPM1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr15	63357452	63357543	+	intron-Distal	6.80366	400.00000	K562	QKI
chr15	63357396	63357452	+	intron-Distal	6.64357	45.89854	K562	QKI
chr15	63357466	63357530	+	intron-Distal	6.81206	36.28550	HepG2	QKI
chr15	63361985	63362162	+	3'-UTR,CDS,intron-Distal,intron-Proximal	4.80213	35.32949	HepG2	QKI
chr15	63353829	63353923	+	CDS,intron-Distal,intron-Proximal	4.96196	33.43887	HepG2	U2AF2
chr15	63353068	63353168	+	3'-UTR,CDS,intron-Distal,intron-Proximal	5.19883	21.32858	HepG2	GRWD1
chr15	63336091	63336183	+	intron-Distal,intron-Proximal	4.47063	18.62044	HepG2	PCBP2
chr15	63353633	63353698	+	intron-Distal	6.29427	16.73885	HepG2	U2AF2
chr15	63357530	63357576	+	intron-Distal	5.42507	15.67738	HepG2	QKI
chr15	63363444	63363538	+	3'-UTR	3.59969	12.82705	HepG2	HNRNPL
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 77 entries

eCLIP assay for TPM1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TPM1 is not available on ENCORE database.
109 RBPs can affect the levels of TPM1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TPM1 is not available on ENCORE database.

109 RBPs can affect the gene expression of TPM1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TPM1	ENSG00000140416.15	4250.87520	1759.95600	1.27210	81.65410	79.90550	HepG2	SRFBP1
TPM1	ENSG00000140416.15	4620.35030	1782.49110	1.37400	75.88240	73.52630	HepG2	CELF1
TPM1	ENSG00000140416.15	171.61870	832.42620	-2.27810	62.44530	59.46910	K562	PTBP1
TPM1	ENSG00000140416.15	3806.55380	1128.97760	1.75340	43.83820	41.78540	HepG2	SUPV3L1
TPM1	ENSG00000140416.15	2611.52530	1283.86010	1.02430	40.49940	38.66890	HepG2	PCBP1
TPM1	ENSG00000140416.15	2114.92650	1071.45240	0.98090	37.45130	35.83840	HepG2	ACO1
TPM1	ENSG00000140416.15	2321.60710	1293.88300	0.84330	34.82710	33.44910	HepG2	ZNF622
TPM1	ENSG00000140416.15	2546.22430	1360.09600	0.90460	31.16330	29.56620	HepG2	SF3B4
TPM1	ENSG00000140416.15	2073.83110	1232.16560	0.75100	26.43500	24.77810	HepG2	SMN1
TPM1	ENSG00000140416.15	2326.11270	1419.65520	0.71230	20.40890	19.37450	HepG2	SRSF1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 128 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TPM1 is not available on ENCORE database.

33 RBPs can affect the splicing of TPM1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	TPM1	ENSG00000140416.15	chr15	+	63353911	63353987	63353396	63353472	63354413	63354476	0.13500	0.00005	included	HepG2	U2AF1
SE	TPM1	ENSG00000140416.15	chr15	+	63353911	63353987	63353396	63353472	63354413	63354476	0.18100	0.00000	included	HepG2	U2AF2
SE	TPM1	ENSG00000140416.15	chr15	+	63335904	63336030	63334956	63335142	63336225	63336351	0.12000	0.00000	included	HepG2	U2AF2
SE	TPM1	ENSG00000140416.15	chr15	+	63353911	63353987	63353234	63353472	63354413	63354476	0.54800	0.00000	included	HepG2	PTBP1
SE	TPM1	ENSG00000140416.15	chr15	+	63353396	63353472	63353067	63353138	63353911	63353987	-0.34500	0.00000	excluded	HepG2	PTBP1
SE	TPM1	ENSG00000140416.15	chr15	+	63353911	63353987	63353396	63353472	63354413	63354476	0.14000	0.00000	included	K562	U2AF1
SE	TPM1	ENSG00000140416.15	chr15	+	63353911	63353987	63353396	63353472	63354413	63354476	0.11500	0.00003	included	HepG2	DDX6
SE	TPM1	ENSG00000140416.15	chr15	+	63353911	63353987	63353396	63353472	63354413	63354476	0.15700	0.00001	included	K562	U2AF2
SE	TPM1	ENSG00000140416.15	chr15	+	63353396	63353472	63353067	63353138	63353911	63353987	-0.19900	0.00015	excluded	K562	AGGF1
SE	TPM1	ENSG00000140416.15	chr15	+	63353911	63353987	63353396	63353472	63354413	63354476	0.13000	0.00107	included	HepG2	FUBP3

Showing 1 to 10 of 78 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TPM1

General Information

Functions

Localization

Domains (AlphaFold: TPM1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TPM1 is not avaliable on ENCORE database.

24 proteins are bound to TPM1 RNA:

eCLIP assay for TPM1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TPM1 is not available on ENCORE database.

109 RBPs can affect the gene expression of TPM1 :

The Knockdown/knockout RNA-Seq assay for TPM1 is not available on ENCORE database.

33 RBPs can affect the splicing of TPM1 :

The Knockdown/knockout RNA-Seq assay for TPM1 is not avaliable on ENCORE database.