TNPO1

General Information

Gene Name : TNPO1
Gene ID : ENSG00000083312.17
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TNPO1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TNPO1	ENSG00000083312.17	56.98	55.65	56.31	ENCSR000AEF
HepG2	TNPO1	ENSG00000083312.17	64.29	59.09	61.69	ENCSR985KAT
K562	TNPO1	ENSG00000083312.17	70.41	65.85	68.13	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TNPO1 is not avaliable on ENCORE database.

Proteins bound to RNA

TNPO1 RNA is bound by 36 proteins.

CanvasJS.com

eCLIP assay for TNPO1 is not avaliable on ENCORE database.

36 proteins are bound to TNPO1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr5	72177219	72177369	+	intron-Distal	7.17846	37.56478	K562	QKI
chr5	72177247	72177385	+	intron-Distal	5.44852	25.42709	HepG2	QKI
chr5	72181801	72181977	+	intron-Distal	5.04794	24.37513	HepG2	QKI
chr5	72204643	72204728	+	3'-UTR	4.22100	23.46653	K562	FAM120A
chr5	72205198	72205273	+	3'-UTR	3.95274	22.30830	K562	FAM120A
chr5	72143962	72144082	+	5'-UTR,intron-Distal,intron-Proximal	5.03215	22.23931	K562	DDX3X
chr5	72182895	72182972	+	CDS,intron-Proximal	4.67401	20.44120	HepG2	BCLAF1
chr5	72208108	72208163	+	3'-UTR	3.63388	19.87808	K562	PUM2
chr5	72205200	72205274	+	3'-UTR	3.91930	18.11803	K562	UPF1
chr5	72208195	72208260	+	3'-UTR	3.93661	16.61712	K562	PUM2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 143 entries

eCLIP assay for TNPO1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TNPO1 is not available on ENCORE database.
114 RBPs can affect the levels of TNPO1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TNPO1 is not available on ENCORE database.

114 RBPs can affect the gene expression of TNPO1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TNPO1	ENSG00000083312.13	1228.77520	2722.40790	-1.14770	63.95180	61.10310	HepG2	DNAJC2
TNPO1	ENSG00000083312.13	5601.56360	2976.66650	0.91200	47.04040	45.60900	HepG2	SRSF1
TNPO1	ENSG00000083312.13	1440.46790	3003.98390	-1.06030	47.39960	45.44040	HepG2	TRIM56
TNPO1	ENSG00000083312.13	1876.88790	3392.48360	-0.85400	42.63050	40.38940	HepG2	HNRNPL
TNPO1	ENSG00000083312.13	2991.31590	5521.58920	-0.88430	38.19720	36.44540	HepG2	ETF1
TNPO1	ENSG00000083312.13	2797.47160	4809.30580	-0.78170	26.91700	25.17110	HepG2	AUH
TNPO1	ENSG00000083312.13	1712.56470	2728.77180	-0.67210	22.46160	20.87330	HepG2	SAFB2
TNPO1	ENSG00000083312.13	5369.43930	3741.94200	0.52090	20.89230	19.56840	HepG2	PUM1
TNPO1	ENSG00000083312.13	1995.42620	3923.90800	-0.97560	19.06800	17.70560	HepG2	BOP1
TNPO1	ENSG00000083312.13	1757.00320	2977.53820	-0.76100	18.05400	16.98280	HepG2	TIAL1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 142 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TNPO1 is not available on ENCORE database.

10 RBPs can affect the splicing of TNPO1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	TNPO1	ENSG00000083312.13	chr5	+	72192882	72192978			72192284	72192383	72195832	72195908	-0.16800	0.00000	excluded	HepG2	U2AF1
SE	TNPO1	ENSG00000083312.13	chr5	+	72192882	72192978			72192284	72192383	72195832	72195908	-0.11100	0.00000	excluded	HepG2	U2AF2
SE	TNPO1	ENSG00000083312.13	chr5	+	72189442	72189530			72189203	72189362	72192284	72192383	-0.07900	0.00000	excluded	K562	AQR
SE	TNPO1	ENSG00000083312.13	chr5	+	72192882	72192978			72189502	72189530	72195832	72195908	-0.09900	0.00002	excluded	K562	U2AF1
SE	TNPO1	ENSG00000083312.13	chr5	+	72192882	72192978			72192284	72192383	72195832	72195908	-0.09800	0.00000	excluded	K562	U2AF2
SE	TNPO1	ENSG00000083312.13	chr5	+	72171441	72171564			72168465	72168547	72173054	72173173	-0.17500	0.00000	excluded	K562	HNRNPU
A3SS	TNPO1	ENSG00000083312.13	chr5	+	72157615	72157742			72157634	72157742	72151600	72151750	0.10700	0.00000	longer	K562	AQR
MXE	TNPO1	ENSG00000083312.13	chr5	+	72187636	72187723	72188965	72189073	72185612	72185784	72189203	72189362	0.15200	0.00001	1included	K562	DROSHA
MXE	TNPO1	ENSG00000083312.13	chr5	+	72192284	72192383	72195832	72195908	72189203	72189362	72196800	72196900	0.05400	0.00000	1included	K562	AQR
MXE	TNPO1	ENSG00000083312.13	chr5	+	72192284	72192383	72192882	72192978	72189203	72189362	72195832	72195908	0.10600	0.00000	1included	K562	U2AF2

Showing 1 to 10 of 20 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TNPO1

General Information

Functions

Localization

Domains (AlphaFold: TNPO1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TNPO1 is not avaliable on ENCORE database.

36 proteins are bound to TNPO1 RNA:

eCLIP assay for TNPO1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TNPO1 is not available on ENCORE database.

114 RBPs can affect the gene expression of TNPO1 :

The Knockdown/knockout RNA-Seq assay for TNPO1 is not available on ENCORE database.

10 RBPs can affect the splicing of TNPO1 :

The Knockdown/knockout RNA-Seq assay for TNPO1 is not avaliable on ENCORE database.