TNFAIP3

General Information

Gene Name : TNFAIP3
Gene ID : ENSG00000118503.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: TNFAIP3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	TNFAIP3	ENSG00000118503.14	107.85	101.42	104.63	ENCSR000AEF
HepG2	TNFAIP3	ENSG00000118503.14	21.73	27.63	24.68	ENCSR985KAT
K562	TNFAIP3	ENSG00000118503.14	8.34	6.56	7.45	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for TNFAIP3 is not avaliable on ENCORE database.

Proteins bound to RNA

TNFAIP3 RNA is bound by 21 proteins.

CanvasJS.com

eCLIP assay for TNFAIP3 is not avaliable on ENCORE database.

21 proteins are bound to TNFAIP3 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr6	138196941	138197016	+	CDS,intron-Proximal	5.12406	24.20385	HepG2	PRPF8
chr6	138192335	138192394	+	3'-UTR,5'-UTR,CDS,intron-Proximal	4.87606	16.37658	HepG2	U2AF2
chr6	138195956	138196024	+	CDS,intron-Proximal	4.77894	15.50357	HepG2	U2AF2
chr6	138203719	138203810	+	3'-UTR	6.01880	14.19616	HepG2	CSTF2
chr6	138198329	138198383	+	CDS	4.82626	11.99174	HepG2	BCLAF1
chr6	138197016	138197073	+	intron-Proximal	5.85287	11.46503	HepG2	PRPF8
chr6	138192530	138192670	+	CDS,intron-Proximal	3.64495	10.27793	HepG2	GRWD1
chr6	138203721	138203809	+	3'-UTR	5.26357	9.14519	K562	CSTF2T
chr6	138192687	138192729	+	intron-Proximal	5.37522	8.38475	HepG2	RBM22
chr6	138199617	138199669	+	CDS	3.89721	8.08603	HepG2	BCLAF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 54 entries

eCLIP assay for TNFAIP3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for TNFAIP3 is not available on ENCORE database.
146 RBPs can affect the levels of TNFAIP3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for TNFAIP3 is not available on ENCORE database.

146 RBPs can affect the gene expression of TNFAIP3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
TNFAIP3	ENSG00000118503.10	4493.43060	1635.42080	1.45810	120.49450	117.77620	HepG2	CKAP4
TNFAIP3	ENSG00000118503.10	3146.20960	1287.41310	1.28900	67.22570	64.96840	HepG2	PCBP1
TNFAIP3	ENSG00000118503.10	3467.46910	1666.32090	1.05710	52.37410	50.40770	HepG2	PUS1
TNFAIP3	ENSG00000118503.10	964.51880	319.41290	1.59430	43.34480	41.19040	K562	EIF2S2
TNFAIP3	ENSG00000118503.10	613.07950	1756.99790	-1.51900	41.61070	39.64430	HepG2	PUF60
TNFAIP3	ENSG00000118503.10	2314.27450	1158.21980	0.99860	40.45730	38.83570	HepG2	SRSF9
TNFAIP3	ENSG00000118503.10	723.55510	1531.99880	-1.08220	38.39860	36.48220	HepG2	ZC3H8
TNFAIP3	ENSG00000118503.10	3312.62600	1329.13140	1.31740	33.78590	31.63180	HepG2	HNRNPK
TNFAIP3	ENSG00000118503.10	2877.30230	1287.59480	1.15990	33.09400	30.97790	HepG2	RBM25
TNFAIP3	ENSG00000118503.10	1295.15280	441.69890	1.55190	33.30670	30.93820	K562	HSPD1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 183 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for TNFAIP3 is not available on ENCORE database.

2 RBPs can affect the splicing of TNFAIP3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	TNFAIP3	ENSG00000118503.10	chr6	+	138196824	138197061			138196972	138197061	138195981	138196172	-0.28900	0.00000	0.00735	shorter	HepG2	EFTUD2
MXE	TNFAIP3	ENSG00000118503.10	chr6	+	138196824	138196972	138196972	138197061	138195981	138196172	138197132	138197303	-0.09400	0.00011	0.02509	2included	HepG2	EFTUD2
MXE	TNFAIP3	ENSG00000118503.10	chr6	+	138196870	138196972	138196972	138197061	138195981	138196172	138197132	138197303	-0.17700	0.00049	0.08234	2included	HepG2	EFTUD2
MXE	TNFAIP3	ENSG00000118503.10	chr6	+	138196824	138196972	138196972	138197061	138195981	138196172	138198212	138198393	-0.15200	0.00181	0.04665	2included	HepG2	MATR3

Showing 1 to 4 of 4 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

TNFAIP3

General Information

Functions

Localization

Domains (AlphaFold: TNFAIP3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for TNFAIP3 is not avaliable on ENCORE database.

21 proteins are bound to TNFAIP3 RNA:

eCLIP assay for TNFAIP3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for TNFAIP3 is not available on ENCORE database.

146 RBPs can affect the gene expression of TNFAIP3 :

The Knockdown/knockout RNA-Seq assay for TNFAIP3 is not available on ENCORE database.

2 RBPs can affect the splicing of TNFAIP3 :

The Knockdown/knockout RNA-Seq assay for TNFAIP3 is not avaliable on ENCORE database.