SYVN1

General Information

Gene Name : SYVN1
Gene ID : ENSG00000162298.18
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SYVN1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SYVN1	ENSG00000162298.18	33.28	29.95	31.62	ENCSR000AEF
HepG2	SYVN1	ENSG00000162298.18	44.52	27.85	36.19	ENCSR985KAT
K562	SYVN1	ENSG00000162298.18	27.81	27.00	27.41	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SYVN1 is not avaliable on ENCORE database.

Proteins bound to RNA

SYVN1 RNA is bound by 33 proteins.

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eCLIP assay for SYVN1 is not avaliable on ENCORE database.

33 proteins are bound to SYVN1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr11	64894940	64895013	-	3'-UTR,intron-Distal	5.90690	50.13772	K562	UPF1
chr11	64895242	64895318	-	3'-UTR,intron-Distal	7.39080	45.83748	HepG2	UPF1
chr11	64895247	64895313	-	3'-UTR,intron-Distal	5.95385	43.55660	K562	UPF1
chr11	64895310	64895389	-	3'-UTR,intron-Distal	5.75070	41.53772	HepG2	AKAP1
chr11	64895313	64895387	-	3'-UTR,intron-Distal	5.46842	41.29257	K562	UPF1
chr11	64895324	64895395	-	3'-UTR,intron-Distal	4.72579	40.96928	HepG2	PCBP2
chr11	64895318	64895380	-	3'-UTR,intron-Distal	6.12488	38.47550	HepG2	UPF1
chr11	64895061	64895118	-	3'-UTR,intron-Distal	6.41337	37.71429	K562	UPF1
chr11	64894930	64895004	-	3'-UTR,intron-Distal	6.08363	37.28842	HepG2	UPF1
chr11	64895117	64895211	-	3'-UTR,intron-Distal	5.42057	33.20865	HepG2	AKAP1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 169 entries

eCLIP assay for SYVN1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SYVN1 is not available on ENCORE database.
99 RBPs can affect the levels of SYVN1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SYVN1 is not available on ENCORE database.

99 RBPs can affect the gene expression of SYVN1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SYVN1	ENSG00000162298.12	1932.71230	1067.62260	0.85610	28.83870	27.07020	HepG2	SAFB2
SYVN1	ENSG00000162298.12	2035.39300	1175.30250	0.79220	23.83690	22.38340	HepG2	TRIM56
SYVN1	ENSG00000162298.12	3724.62340	2334.66560	0.67380	22.99650	21.16840	K562	UPF1
SYVN1	ENSG00000162298.12	1486.79000	2441.40860	-0.71550	21.26280	19.83400	HepG2	UTP3
SYVN1	ENSG00000162298.12	1046.99790	1812.54070	-0.79180	18.42780	17.32970	HepG2	RBM22
SYVN1	ENSG00000162298.12	2347.29860	1218.40460	0.94590	19.52620	16.69710	K562	PSIP1
SYVN1	ENSG00000162298.12	1064.62690	2065.44180	-0.95610	16.44420	15.49700	HepG2	SRSF1
SYVN1	ENSG00000162298.12	2356.42050	1256.68940	0.90690	15.70100	14.22620	HepG2	CPSF6
SYVN1	ENSG00000162298.12	2007.37800	944.54290	1.08750	16.49740	14.05170	K562	EFTUD2
SYVN1	ENSG00000162298.12	2284.42860	1270.09030	0.84680	15.64400	13.71980	K562	GPKOW
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 115 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SYVN1 is not available on ENCORE database.

36 RBPs can affect the splicing of SYVN1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	SYVN1	ENSG00000162298.12	chr11	-	64900202	64900251	64898940	64899067	64900392	64900545	-0.07000	0.00001	excluded	K562	PUS1
A3SS	SYVN1	ENSG00000162298.12	chr11	-	64900630	64900841	64900630	64900723	64900940	64901148	0.14900	0.00000	longer	K562	AQR
RI	SYVN1	ENSG00000162298.12	chr11	-	64899718	64900251	64899718	64899822	64900202	64900251	0.20800	0.00001	included	K562	SF3B4
RI	SYVN1	ENSG00000162298.12	chr11	-	64900392	64900791	64900392	64900545	64900630	64900791	0.17400	0.00000	included	K562	PUS1
RI	SYVN1	ENSG00000162298.12	chr11	-	64899718	64900251	64899718	64899822	64900202	64900251	0.29600	0.00000	included	K562	PUS1
RI	SYVN1	ENSG00000162298.12	chr11	-	64898744	64899067	64898744	64898844	64898940	64899067	0.08000	0.00000	included	K562	PUS1
RI	SYVN1	ENSG00000162298.12	chr11	-	64898744	64899067	64898744	64898844	64898940	64899067	0.11200	0.00000	included	HepG2	SF3A3
RI	SYVN1	ENSG00000162298.12	chr11	-	64899718	64900251	64899718	64899822	64900202	64900251	-0.19800	0.00000	excluded	K562	HNRNPC
RI	SYVN1	ENSG00000162298.12	chr11	-	64899718	64900251	64899718	64899822	64900202	64900251	0.21800	0.00000	included	HepG2	PRPF8
RI	SYVN1	ENSG00000162298.12	chr11	-	64900392	64900791	64900392	64900545	64900630	64900791	0.06800	0.00000	included	K562	AGGF1

Showing 1 to 10 of 85 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SYVN1

General Information

Functions

Localization

Domains (AlphaFold: SYVN1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SYVN1 is not avaliable on ENCORE database.

33 proteins are bound to SYVN1 RNA:

eCLIP assay for SYVN1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SYVN1 is not available on ENCORE database.

99 RBPs can affect the gene expression of SYVN1 :

The Knockdown/knockout RNA-Seq assay for SYVN1 is not available on ENCORE database.

36 RBPs can affect the splicing of SYVN1 :

The Knockdown/knockout RNA-Seq assay for SYVN1 is not avaliable on ENCORE database.