SLC43A1

General Information

Gene Name : SLC43A1
Gene ID : ENSG00000149150.8
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SLC43A1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SLC43A1	ENSG00000149150.8	6.20	8.07	7.13	ENCSR000AEF
HepG2	SLC43A1	ENSG00000149150.8	51.44	28.84	40.14	ENCSR985KAT
K562	SLC43A1	ENSG00000149150.8	26.93	22.44	24.69	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SLC43A1 is not avaliable on ENCORE database.

Proteins bound to RNA

SLC43A1 RNA is bound by 23 proteins.

CanvasJS.com

eCLIP assay for SLC43A1 is not avaliable on ENCORE database.

23 proteins are bound to SLC43A1 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr11	57261608	57261721	-	CDS,intron-Distal,intron-Proximal	6.92075	34.17538	HepG2	SF3B4
chr11	57267977	57268107	-	intron-Distal	6.71742	31.24239	K562	TARDBP
chr11	57282258	57282326	-	5'-UTR,intron-Distal,intron-Proximal	6.46866	28.88416	HepG2	DDX3X
chr11	57268196	57268291	-	3'-UTR,CDS,intron-Distal,intron-Proximal	4.51169	27.65349	HepG2	PRPF8
chr11	57281569	57281598	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.72146	23.35418	HepG2	DDX3X
chr11	57282252	57282258	-	5'-UTR,intron-Distal	7.10714	22.45831	HepG2	DDX3X
chr11	57261600	57261697	-	CDS,intron-Distal,intron-Proximal	3.09253	20.48311	HepG2	BUD13
chr11	57252042	57252159	-	3'-UTR,intron-Distal	4.58581	18.14679	HepG2	UPF1
chr11	57277029	57277098	-	intron-Distal	6.11788	16.48000	HepG2	PTBP1
chr11	57259116	57259166	-	intron-Distal,intron-Proximal	3.92868	15.85242	HepG2	RBM22
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 93 entries

eCLIP assay for SLC43A1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SLC43A1 is not available on ENCORE database.
115 RBPs can affect the levels of SLC43A1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SLC43A1 is not available on ENCORE database.

115 RBPs can affect the gene expression of SLC43A1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SLC43A1	ENSG00000149150.4	662.56070	2751.45300	-2.05410	66.00090	64.38960	HepG2	SRSF1
SLC43A1	ENSG00000149150.4	674.54520	2408.10960	-1.83590	60.63070	59.07020	HepG2	SRFBP1
SLC43A1	ENSG00000149150.4	959.35590	2817.72410	-1.55440	43.12650	41.56650	HepG2	NELFE
SLC43A1	ENSG00000149150.4	788.65410	2334.67280	-1.56580	41.89010	39.47230	HepG2	HNRNPK
SLC43A1	ENSG00000149150.4	854.28210	2817.21980	-1.72150	37.94960	36.29460	HepG2	AKAP1
SLC43A1	ENSG00000149150.4	981.13200	2132.13970	-1.11980	30.38660	29.03450	HepG2	RBM22
SLC43A1	ENSG00000149150.4	1170.53470	2472.86530	-1.07900	30.49920	28.90670	HepG2	TAF15
SLC43A1	ENSG00000149150.4	1788.27640	729.62150	1.29320	25.57000	23.97470	HepG2	HNRNPLL
SLC43A1	ENSG00000149150.4	939.88160	2214.57780	-1.23650	24.80620	22.80210	HepG2	CIRBP
SLC43A1	ENSG00000149150.4	1289.34030	2488.25960	-0.94850	23.48110	22.00360	HepG2	PCBP1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 137 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SLC43A1 is not available on ENCORE database.

25 RBPs can affect the splicing of SLC43A1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	SLC43A1	ENSG00000149150.4	chr11	-	57259063	57259099	57258696	57258835	57259188	57259335	-0.49200	0.00000	excluded	HepG2	U2AF2
SE	SLC43A1	ENSG00000149150.4	chr11	-	57265225	57265318	57263503	57263637	57268251	57268328	0.18000	0.00013	included	HepG2	HNRNPC
A3SS	SLC43A1	ENSG00000149150.4	chr11	-	57256723	57256953	57256723	57256865	57258696	57258835	0.09000	0.00007	longer	K562	AGGF1
A3SS	SLC43A1	ENSG00000149150.4	chr11	-	57263503	57263745	57263503	57263637	57265225	57265318	0.11600	0.00002	longer	HepG2	HNRNPK
A3SS	SLC43A1	ENSG00000149150.4	chr11	-	57256723	57256953	57256723	57256865	57258696	57258835	0.08900	0.00012	longer	K562	AKAP8L
A3SS	SLC43A1	ENSG00000149150.4	chr11	-	57256723	57256953	57256723	57256865	57258696	57258835	0.13500	0.00000	longer	HepG2	U2AF2
A3SS	SLC43A1	ENSG00000149150.4	chr11	-	57256723	57256953	57256723	57256865	57258696	57258835	0.12200	0.00000	longer	K562	PUS1
A3SS	SLC43A1	ENSG00000149150.4	chr11	-	57256723	57256953	57256723	57256865	57258696	57258835	0.06300	0.00003	longer	HepG2	SFPQ
A3SS	SLC43A1	ENSG00000149150.4	chr11	-	57256723	57256953	57256723	57256865	57258696	57258835	0.13600	0.00000	longer	HepG2	U2AF1
A3SS	SLC43A1	ENSG00000149150.4	chr11	-	57263503	57263745	57263503	57263637	57265225	57265318	0.13200	0.00000	longer	HepG2	SF3B4

Showing 1 to 10 of 55 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SLC43A1

General Information

Functions

Localization

Domains (AlphaFold: SLC43A1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SLC43A1 is not avaliable on ENCORE database.

23 proteins are bound to SLC43A1 RNA:

eCLIP assay for SLC43A1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SLC43A1 is not available on ENCORE database.

115 RBPs can affect the gene expression of SLC43A1 :

The Knockdown/knockout RNA-Seq assay for SLC43A1 is not available on ENCORE database.

25 RBPs can affect the splicing of SLC43A1 :

The Knockdown/knockout RNA-Seq assay for SLC43A1 is not avaliable on ENCORE database.