SLC38A3

General Information

Gene Name : SLC38A3
Gene ID : ENSG00000188338.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SLC38A3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SLC38A3	ENSG00000188338.14	0.00	0.00	0.00	ENCSR000AEF
HepG2	SLC38A3	ENSG00000188338.14	59.96	28.95	44.45	ENCSR985KAT
K562	SLC38A3	ENSG00000188338.14	0.05	0.01	0.03	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SLC38A3 is not avaliable on ENCORE database.

Proteins bound to RNA

SLC38A3 RNA is bound by 24 proteins.

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eCLIP assay for SLC38A3 is not avaliable on ENCORE database.

24 proteins are bound to SLC38A3 RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr3	50256000	50256052	+	intron-Proximal	4.68867	40.87559	HepG2	SF3A3
chr3	50255970	50256000	+	intron-Proximal	4.67111	31.01383	HepG2	SF3A3
chr3	50256006	50256015	+	intron-Proximal	6.85146	27.95865	HepG2	SF3B4
chr3	50256015	50256020	+	intron-Proximal	5.80616	26.96487	HepG2	SF3B4
chr3	50255925	50255974	+	intron-Proximal	5.04409	25.92385	HepG2	RBFOX2
chr3	50255967	50256006	+	intron-Proximal	5.31720	23.71399	HepG2	SF3B4
chr3	50255946	50256021	+	intron-Proximal	4.23981	22.44064	HepG2	EFTUD2
chr3	50254784	50254840	+	intron-Proximal	6.01760	20.43001	HepG2	EFTUD2
chr3	50255891	50255949	+	intron-Distal,intron-Proximal	3.50426	17.73346	HepG2	PRPF8
chr3	50256020	50256034	+	intron-Proximal	5.14717	15.82879	HepG2	SF3B4
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 60 entries

eCLIP assay for SLC38A3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SLC38A3 is not available on ENCORE database.
144 RBPs can affect the levels of SLC38A3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SLC38A3 is not available on ENCORE database.

144 RBPs can affect the gene expression of SLC38A3 :

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Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SLC38A3	ENSG00000188338.10	371.81190	2698.60480	-2.85960	239.57500	236.88500	HepG2	SRFBP1
SLC38A3	ENSG00000188338.10	3938.34390	1072.89210	1.87600	134.24940	131.36650	HepG2	SRSF7
SLC38A3	ENSG00000188338.10	7500.63720	1382.59100	2.43950	123.70230	120.38490	HepG2	NSUN2
SLC38A3	ENSG00000188338.10	7901.70680	1570.06770	2.33120	118.62470	116.14450	HepG2	BOP1
SLC38A3	ENSG00000188338.10	523.07960	2389.29530	-2.19150	116.79310	114.46330	HepG2	RBM22
SLC38A3	ENSG00000188338.10	5629.93370	1946.94680	1.53180	109.20330	106.72440	HepG2	DKC1
SLC38A3	ENSG00000188338.10	4346.80710	1749.84400	1.31260	102.72050	99.97480	HepG2	SLBP
SLC38A3	ENSG00000188338.10	3169.64480	1112.17120	1.51080	102.47970	99.67980	HepG2	SAFB2
SLC38A3	ENSG00000188338.10	4991.82470	2072.82240	1.26790	87.33140	84.93400	HepG2	PUS1
SLC38A3	ENSG00000188338.10	3270.87540	1119.49910	1.54670	78.94890	76.09130	HepG2	DNAJC21
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 145 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SLC38A3 is not available on ENCORE database.

17 RBPs can affect the splicing of SLC38A3 :

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Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	SLC38A3	ENSG00000188338.10	chr3	+	50256235	50256380	50256024	50256149	50257312	50257416	-0.09500	0.00000	excluded	HepG2	U2AF1
SE	SLC38A3	ENSG00000188338.10	chr3	+	50254846	50254905	50253171	50253253	50255107	50255272	-0.12900	0.00000	excluded	HepG2	U2AF1
SE	SLC38A3	ENSG00000188338.10	chr3	+	50256235	50256380	50256024	50256149	50257312	50257416	-0.10500	0.00002	excluded	HepG2	U2AF2
SE	SLC38A3	ENSG00000188338.10	chr3	+	50254846	50254905	50253171	50253253	50255107	50255272	-0.09300	0.00000	excluded	HepG2	U2AF2
SE	SLC38A3	ENSG00000188338.10	chr3	+	50252084	50252200	50251581	50251733	50252817	50252891	-0.19400	0.00000	excluded	HepG2	SRSF1
SE	SLC38A3	ENSG00000188338.10	chr3	+	50252084	50252200	50251581	50251733	50252817	50252891	-0.11200	0.00005	excluded	HepG2	PCBP1
SE	SLC38A3	ENSG00000188338.10	chr3	+	50252084	50252200	50251581	50251733	50252817	50252891	-0.11200	0.00002	excluded	HepG2	SF3B4
SE	SLC38A3	ENSG00000188338.10	chr3	+	50252084	50252200	50251581	50251733	50252817	50252891	-0.10200	0.00048	excluded	HepG2	SRSF9
A5SS	SLC38A3	ENSG00000188338.10	chr3	+	50255701	50255920	50255701	50255802	50256024	50256149	0.10600	0.00006	longer	HepG2	TAF15
A5SS	SLC38A3	ENSG00000188338.10	chr3	+	50252084	50252307	50252084	50252200	50252817	50252891	0.05900	0.00059	longer	HepG2	RBM22

Showing 1 to 10 of 24 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SLC38A3

General Information

Functions

Localization

Domains (AlphaFold: SLC38A3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SLC38A3 is not avaliable on ENCORE database.

24 proteins are bound to SLC38A3 RNA:

eCLIP assay for SLC38A3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SLC38A3 is not available on ENCORE database.

144 RBPs can affect the gene expression of SLC38A3 :

The Knockdown/knockout RNA-Seq assay for SLC38A3 is not available on ENCORE database.

17 RBPs can affect the splicing of SLC38A3 :

The Knockdown/knockout RNA-Seq assay for SLC38A3 is not avaliable on ENCORE database.