SH3D19

General Information

Gene Name : SH3D19
Gene ID : ENSG00000109686.17
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SH3D19)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SH3D19	ENSG00000109686.17	0.00	0.00	0.00	ENCSR000AEF
HepG2	SH3D19	ENSG00000109686.17	18.01	30.90	24.45	ENCSR985KAT
K562	SH3D19	ENSG00000109686.17	0.00	0.00	0.00	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SH3D19 is not avaliable on ENCORE database.

Proteins bound to RNA

SH3D19 RNA is bound by 40 proteins.

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eCLIP assay for SH3D19 is not avaliable on ENCORE database.

40 proteins are bound to SH3D19 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr4	152246660	152246776	-	intron-Distal	4.54002	44.54377	HepG2	NCBP2
chr4	152099145	152099213	-	intron-Distal	5.98783	32.00490	HepG2	XPO5
chr4	152223700	152223784	-	intron-Distal	6.05421	30.00825	HepG2	CSTF2
chr4	152054191	152054248	-	CDS,intron-Distal	5.37067	27.71049	HepG2	BCLAF1
chr4	152096319	152096470	-	CDS,intron-Distal,intron-Proximal	3.45244	26.06069	HepG2	BCLAF1
chr4	152096658	152096762	-	5'-UTR,intron-Distal,intron-Proximal	3.30483	25.53119	HepG2	BCLAF1
chr4	152246483	152246577	-	intron-Distal	3.28421	23.59275	HepG2	DDX3X
chr4	152246722	152246774	-	intron-Distal	4.46268	22.53130	HepG2	PRPF4
chr4	152058920	152059008	-	CDS,intron-Distal	3.32697	20.67613	HepG2	BCLAF1
chr4	152188866	152188937	-	intron-Distal	5.38165	19.73592	HepG2	QKI
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 182 entries

eCLIP assay for SH3D19 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SH3D19 is not available on ENCORE database.
116 RBPs can affect the levels of SH3D19.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SH3D19 is not available on ENCORE database.

116 RBPs can affect the gene expression of SH3D19 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SH3D19	ENSG00000109686.12	1781.77580	4807.21150	-1.43190	91.64650	89.65110	HepG2	NELFE
SH3D19	ENSG00000109686.12	1865.67420	4694.08680	-1.33110	88.69050	86.88370	HepG2	SRSF1
SH3D19	ENSG00000109686.12	2037.87450	4243.88530	-1.05830	55.44910	53.87420	HepG2	SSB
SH3D19	ENSG00000109686.12	2477.90430	4887.86140	-0.98010	54.09290	52.61270	HepG2	SRFBP1
SH3D19	ENSG00000109686.12	1281.98390	4571.18630	-1.83420	46.53410	44.00890	HepG2	EIF4A3
SH3D19	ENSG00000109686.12	2106.94130	3862.25030	-0.87430	44.58100	42.55820	HepG2	ZC3H8
SH3D19	ENSG00000109686.12	1625.72580	3117.92660	-0.93950	36.48050	34.75300	HepG2	DKC1
SH3D19	ENSG00000109686.12	1676.57730	3014.10160	-0.84620	36.13970	33.99800	HepG2	DDX19B
SH3D19	ENSG00000109686.12	1587.29620	4131.18130	-1.38000	33.00110	31.14720	HepG2	UPF1
SH3D19	ENSG00000109686.12	1534.00980	3988.47080	-1.37850	32.35210	30.65010	HepG2	UTP3
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 116 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SH3D19 is not available on ENCORE database.

33 RBPs can affect the splicing of SH3D19 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
SE	SH3D19	ENSG00000109686.12	chr4	-	152065371	152065440	152065061	152065202	152069073	152069338	0.26400	0.00000	included	HepG2	G3BP1
SE	SH3D19	ENSG00000109686.12	chr4	-	152065371	152065440	152065061	152065202	152069073	152069338	0.14900	0.00586	included	HepG2	NKRF
SE	SH3D19	ENSG00000109686.12	chr4	-	152065371	152065440	152065061	152065202	152069073	152069338	-0.27500	0.00000	excluded	HepG2	U2AF2
SE	SH3D19	ENSG00000109686.12	chr4	-	152065371	152065440	152065061	152065202	152069073	152069338	0.25200	0.00005	included	HepG2	AKAP1
SE	SH3D19	ENSG00000109686.12	chr4	-	152065371	152065440	152065061	152065202	152069073	152069338	0.23000	0.00169	included	HepG2	LIN28B
SE	SH3D19	ENSG00000109686.12	chr4	-	152091780	152091943	152086740	152086848	152095821	152096444	0.08200	0.00078	included	HepG2	NCBP2
SE	SH3D19	ENSG00000109686.12	chr4	-	152065371	152065440	152065061	152065202	152069073	152069338	0.19000	0.00561	included	HepG2	HLTF
SE	SH3D19	ENSG00000109686.12	chr4	-	152065371	152065440	152065061	152065202	152069073	152069338	0.19200	0.00013	included	HepG2	MATR3
SE	SH3D19	ENSG00000109686.12	chr4	-	152065371	152065440	152065061	152065202	152069073	152069338	0.19200	0.00015	included	HepG2	LARP4
SE	SH3D19	ENSG00000109686.12	chr4	-	152065371	152065440	152065061	152065202	152069073	152069338	0.43900	0.00000	included	HepG2	IGF2BP3

Showing 1 to 10 of 48 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SH3D19

General Information

Functions

Localization

Domains (AlphaFold: SH3D19)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SH3D19 is not avaliable on ENCORE database.

40 proteins are bound to SH3D19 RNA:

eCLIP assay for SH3D19 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SH3D19 is not available on ENCORE database.

116 RBPs can affect the gene expression of SH3D19 :

The Knockdown/knockout RNA-Seq assay for SH3D19 is not available on ENCORE database.

33 RBPs can affect the splicing of SH3D19 :

The Knockdown/knockout RNA-Seq assay for SH3D19 is not avaliable on ENCORE database.