SGTA

General Information

Gene Name : SGTA
Gene ID : ENSG00000104969.9
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SGTA)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SGTA	ENSG00000104969.9	8.36	25.22	16.79	ENCSR000AEF
HepG2	SGTA	ENSG00000104969.9	60.87	21.55	41.21	ENCSR985KAT
K562	SGTA	ENSG00000104969.9	73.17	48.66	60.91	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SGTA is not avaliable on ENCORE database.

Proteins bound to RNA

SGTA RNA is bound by 37 proteins.

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eCLIP assay for SGTA is not avaliable on ENCORE database.

37 proteins are bound to SGTA RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	2767169	2767215	-	CDS,intron-Distal	5.83218	47.62378	K562	LIN28B
chr19	2755079	2755114	-	3'-UTR,intron-Distal	5.55560	46.65156	K562	UPF1
chr19	2755016	2755079	-	3'-UTR,intron-Distal	5.20481	44.42158	K562	UPF1
chr19	2767215	2767219	-	CDS,intron-Distal,intron-Proximal	6.26569	43.98250	K562	LIN28B
chr19	2755114	2755156	-	3'-UTR,intron-Distal	4.97423	36.54811	K562	UPF1
chr19	2755160	2755245	-	3'-UTR,intron-Distal	4.83575	35.46255	K562	UPF1
chr19	2755699	2755782	-	3'-UTR,intron-Distal	3.52846	35.01179	K562	UPF1
chr19	2754777	2754842	-	3'-UTR,intron-Distal	5.24016	33.99353	K562	UPF1
chr19	2755049	2755149	-	3'-UTR,intron-Distal	6.98387	33.58021	HepG2	UPF1
chr19	2767576	2767580	-	CDS,intron-Distal,intron-Proximal	5.90273	32.66763	K562	LIN28B
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 170 entries

eCLIP assay for SGTA is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SGTA is not available on ENCORE database.
114 RBPs can affect the levels of SGTA.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SGTA is not available on ENCORE database.

114 RBPs can affect the gene expression of SGTA :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SGTA	ENSG00000104969.5	314.77720	1124.32930	-1.83670	56.98110	54.85760	HepG2	TAF15
SGTA	ENSG00000104969.5	1773.40210	898.80630	0.98030	37.76170	36.08380	HepG2	PUM1
SGTA	ENSG00000104969.5	1398.01910	620.95240	1.17070	37.75120	35.96520	HepG2	TRIM56
SGTA	ENSG00000104969.5	2096.49360	895.42860	1.22720	31.98340	28.93040	K562	MAGOH
SGTA	ENSG00000104969.5	1202.91000	657.79520	0.87070	23.66670	22.08620	HepG2	SMN1
SGTA	ENSG00000104969.5	1085.33850	564.06060	0.94410	23.51500	21.88300	HepG2	SAFB2
SGTA	ENSG00000104969.5	1655.33240	950.75800	0.79990	22.75960	21.25550	HepG2	SUCLG1
SGTA	ENSG00000104969.5	2621.26790	1589.64490	0.72150	18.85920	17.38900	K562	FXR1
SGTA	ENSG00000104969.5	1720.05820	870.01090	0.98330	18.99650	17.33410	K562	PTBP1
SGTA	ENSG00000104969.5	1188.48440	615.47190	0.94930	18.24570	17.16960	HepG2	TIAL1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 130 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SGTA is not available on ENCORE database.

8 RBPs can affect the splicing of SGTA :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	SGTA	ENSG00000104969.5	chr19	-	2761457	2761520	2757562	2757780	2762503	2762642	-0.16900	0.00000	0.00002	excluded	K562	AKAP8L
SE	SGTA	ENSG00000104969.5	chr19	-	2782567	2782745	2768966	2769089	2783230	2783369	-0.07000	0.00000	0.00028	excluded	K562	SUPV3L1
SE	SGTA	ENSG00000104969.5	chr19	-	2759254	2759292	2757562	2757780	2762503	2762642	-0.12300	0.00000	0.00000	excluded	K562	PUS1
SE	SGTA	ENSG00000104969.5	chr19	-	2759254	2759292	2757562	2757780	2762503	2762642	-0.08100	0.00000	0.00017	excluded	K562	RBM15
SE	SGTA	ENSG00000104969.5	chr19	-	2759254	2759292	2757690	2757780	2762503	2762642	-0.07800	0.00000	0.00017	excluded	K562	AGGF1
A3SS	SGTA	ENSG00000104969.5	chr19	-	2763650	2763826	2763650	2763755	2765183	2765283	0.05200	0.00000	0.00000	longer	K562	AQR
A3SS	SGTA	ENSG00000104969.5	chr19	-	2757334	2757500	2757334	2757455	2757690	2757780	0.06100	0.00000	0.00000	longer	K562	AQR
SE	SGTA	ENSG00000104969.5	chr19	-	2761457	2761520	2757562	2757780	2762503	2762642	-0.13500	0.00029	0.01335	excluded	K562	UTP18
A3SS	SGTA	ENSG00000104969.5	chr19	-	2759254	2759383	2759254	2759292	2761457	2761520	0.10700	0.00054	0.00397	longer	K562	AQR
SE	SGTA	ENSG00000104969.5	chr19	-	2782567	2782745	2768966	2769089	2783230	2783369	0.09000	0.00083	0.07831	included	K562	CPSF6

Showing 1 to 10 of 12 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SGTA

General Information

Functions

Localization

Domains (AlphaFold: SGTA)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SGTA is not avaliable on ENCORE database.

37 proteins are bound to SGTA RNA:

eCLIP assay for SGTA is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SGTA is not available on ENCORE database.

114 RBPs can affect the gene expression of SGTA :

The Knockdown/knockout RNA-Seq assay for SGTA is not available on ENCORE database.

8 RBPs can affect the splicing of SGTA :

The Knockdown/knockout RNA-Seq assay for SGTA is not avaliable on ENCORE database.