SEPT11

General Information

Gene Name : SEPT11
Gene ID : ENSG00000138758.11
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SEPT11)

Not Available

Antibody Validation

View validation images for all SEPT11 antibodies

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SEPT11	ENSG00000138758.11	64.09	60.58	62.34	ENCSR000AEF
HepG2	SEPT11	ENSG00000138758.11	29.88	47.77	38.83	ENCSR985KAT
K562	SEPT11	ENSG00000138758.11	55.88	58.57	57.23	ENCSR000AEO

Assays

3 Released experiments are available on ENCORE database.

Assay Type	Exp_Name	ENCODE ID	Target label	Biosample	Status	Controls	Method	Note
knockdown followed by RNA-seq	SEPT11-BGKcLV33-K562		SEPT11	K562	Released		CRISPR	KD% = 0.0,0.0
knockdown followed by RNA-seq	SEPT11-BGKcLV33-K562	ENCSR727WPW	SEPT11	K562	Released	ENCSR271ZAB	CRISPR	KD% = 95.5,97.0
knockdown followed by RNA-seq	SEPT11-BGHcLV31-HepG2	ENCSR036HUB	SEPT11	HepG2	Released	ENCSR452TFV	CRISPR	KD% = 81.6,81.6

eCLIP

No eCLIP experiment available

Antibody Validation

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
SEPT11	ENCAB005EWU	A304-176A	1					BGKcLV33-45, Released, ENCODE4
SEPT11	ENCAB527RHW	A304-177A	1					BGKcLV33-45, Released, ENCODE4

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project
SEPT11	K562	CRISPR			BGKcLV33-39,BGKcLV33-40	BGKcLV33-1,BGKcLV33-2	0.0,0.0	Released	ENCODE4
SEPT11	K562	CRISPR	ENCSR727WPW	ENCSR271ZAB	SEPT11-BGKcLV33-45,SEPT11-BGKcLV33-46	NT-BGKcLV33-1,NT-BGKcLV33-2	95.5,97.0	Released	ENCODE4
SEPT11	HepG2	CRISPR	ENCSR036HUB	ENCSR452TFV	SEPT11-BGHcLV31-41,SEPT11-BGHcLV31-42	NT-BGHcLV31-1,NT-BGHcLV31-2	81.6,81.6	Released	ENCODE4

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
SEPT11	Product_ID: A304-176A Lot_ID: 1 Source: Bethyl Labs Target Name: SEPT11-human
SEPT11	Product_ID: A304-177A Lot_ID: 1 Source: Bethyl Labs Target Name: SEPT11-human

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SEPT11 is not avaliable on ENCORE database.

Proteins bound to RNA

SEPT11 RNA is bound by 27 proteins.

CanvasJS.com

eCLIP assay for SEPT11 is not avaliable on ENCORE database.

27 proteins are bound to SEPT11 RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr4	77951984	77952126	+	3'-UTR,CDS,intron-Proximal	3.03506	25.42370	K562	ZNF800
chr4	77956955	77957121	+	3'-UTR,intron-Distal	4.08618	22.26647	K562	QKI
chr4	77952041	77952130	+	3'-UTR,CDS,intron-Proximal	4.12292	18.63197	K562	UCHL5
chr4	77951964	77952056	+	CDS	4.02240	18.19956	K562	ZNF622
chr4	77957892	77957973	+	3'-UTR,CDS,intron-Distal,intron-Proximal	5.14174	17.86930	K562	FAM120A
chr4	77870899	77871085	+	5'-UTR,CDS,intron-Proximal	3.23011	14.45552	K562	DDX3X
chr4	77957022	77957118	+	3'-UTR,intron-Distal	3.99991	12.28477	HepG2	QKI
chr4	77958162	77958215	+	3'-UTR,intron-Distal	4.06770	12.07547	K562	FAM120A
chr4	77952056	77952116	+	CDS	3.15307	11.11566	K562	ZNF622
chr4	77951976	77952041	+	CDS	3.43688	10.69984	K562	UCHL5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 73 entries

eCLIP assay for SEPT11 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SEPT11 is not available on ENCORE database.
130 RBPs can affect the levels of SEPT11.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for SEPT11 is not available on ENCORE database.

130 RBPs can affect the gene expression of SEPT11 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SEPT11	ENSG00000138758.7	706.88520	1838.48510	-1.37900	54.65810	52.69960	HepG2	SF3B4
SEPT11	ENSG00000138758.7	803.39280	1735.04740	-1.11080	46.20800	43.82750	HepG2	DNAJC2
SEPT11	ENSG00000138758.7	742.67050	1897.70980	-1.35350	42.56860	41.04270	HepG2	TIAL1
SEPT11	ENSG00000138758.7	522.40650	1775.23830	-1.76480	39.72370	37.00780	HepG2	BCLAF1
SEPT11	ENSG00000138758.7	2332.57010	5293.39750	-1.18230	32.80910	30.98850	K562	AQR
SEPT11	ENSG00000138758.7	995.31820	1914.52360	-0.94380	31.79720	30.14400	HepG2	TRIM56
SEPT11	ENSG00000138758.7	922.50410	1912.47530	-1.05180	28.43970	26.75420	HepG2	QKI
SEPT11	ENSG00000138758.7	1537.21780	3012.93870	-0.97080	27.11690	24.20460	K562	SF3B4
SEPT11	ENSG00000138758.7	1110.05120	2507.78710	-1.17580	25.18550	23.37390	HepG2	CPSF6
SEPT11	ENSG00000138758.7	1442.92270	2475.21200	-0.77860	24.76570	23.08940	HepG2	SRSF7
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 161 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SEPT11 is not available on ENCORE database.

2 RBPs can affect the splicing of SEPT11 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
SE	SEPT11	ENSG00000138758.7	chr4	+	77916933	77917091			77871014	77871083	77917577	77917692	0.10700	0.00031	0.00458	included	K562	AQR
SE	SEPT11	ENSG00000138758.7	chr4	+	77916933	77917091			77871014	77871083	77917577	77917692	0.16800	0.00574	0.09766	included	HepG2	SRSF1

Showing 1 to 2 of 2 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SEPT11

General Information

Functions

Localization

Domains (AlphaFold: SEPT11)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SEPT11 is not avaliable on ENCORE database.

27 proteins are bound to SEPT11 RNA:

eCLIP assay for SEPT11 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SEPT11 is not available on ENCORE database.

130 RBPs can affect the gene expression of SEPT11 :

The Knockdown/knockout RNA-Seq assay for SEPT11 is not available on ENCORE database.

2 RBPs can affect the splicing of SEPT11 :

The Knockdown/knockout RNA-Seq assay for SEPT11 is not avaliable on ENCORE database.