PTCHD4

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PTCHD4	ENSG00000244694.7	0.02	0.05	0.04	ENCSR000AEF
HepG2	PTCHD4	ENSG00000244694.7	15.15	21.46	18.30	ENCSR985KAT
K562	PTCHD4	ENSG00000244694.7	0.00	0.00	0.00	ENCSR000AEO

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PTCHD4 is not avaliable on ENCORE database.

Proteins bound to RNA

PTCHD4 RNA is bound by 33 proteins.

eCLIP assay for PTCHD4 is not avaliable on ENCORE database.

33 proteins are bound to PTCHD4 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr6	47867480	47867582	-	3'-UTR,intron-Distal,intron-Proximal	3.97073	3.98004	HepG2	TAF15
chr6	47845903	47846016	-	3'-UTR,intron-Distal	4.97052	6.23064	HepG2	UPF1
chr6	48036393	48036421	-	5'-UTR,intron-Distal,intron-Proximal	3.55334	5.38345	HepG2	RBFOX2
chr6	48036309	48036367	-	5'-UTR,CDS,intron-Distal	4.62712	5.27053	HepG2	PPIG
chr6	48036399	48036426	-	5'-UTR,intron-Distal,intron-Proximal	3.35312	4.36184	HepG2	PRPF4
chr6	48036337	48036384	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.16172	9.94696	HepG2	FAM120A
chr6	48036384	48036426	-	5'-UTR,CDS,intron-Distal,intron-Proximal	4.52267	35.26845	HepG2	FAM120A
chr6	48036384	48036426	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.50441	11.51994	HepG2	CSTF2T
chr6	48036290	48036382	-	5'-UTR,CDS,intron-Distal,intron-Proximal	3.05043	5.57105	HepG2	SRSF1
chr6	48036383	48036426	-	5'-UTR,CDS,intron-Distal,intron-Proximal	5.80337	14.84776	HepG2	GTF2F1
chr6	47976334	47976445	-	CDS,intron-Distal,intron-Proximal	4.18508	18.29158	HepG2	GRWD1
chr6	47976591	47976626	-	CDS,intron-Distal	3.26162	5.40132	HepG2	BCLAF1
chr6	47976463	47976503	-	CDS,intron-Distal	4.68573	5.42508	HepG2	RBM15
chr6	47846983	47847019	-	CDS,intron-Distal	3.58950	3.07152	HepG2	HLTF
chr6	47976758	47976831	-	CDS,intron-Distal	3.05883	4.86573	HepG2	EIF3H
chr6	47976662	47976762	-	CDS,intron-Distal	3.50283	9.58775	HepG2	GRWD1
chr6	47847109	47847159	-	CDS,intron-Distal	3.46159	3.27569	HepG2	BCLAF1
chr6	47847088	47847139	-	CDS,intron-Distal	3.93977	3.29371	HepG2	IGF2BP1
chr6	47961134	47961179	-	intron-Distal	4.72287	18.04500	HepG2	MATR3
chr6	47966262	47966340	-	intron-Distal	3.61892	6.29905	HepG2	MATR3
chr6	47914642	47914710	-	intron-Distal	3.06504	5.82118	HepG2	HLTF
chr6	48025374	48025440	-	intron-Distal	3.86669	12.82097	HepG2	HNRNPL
chr6	47961431	47961493	-	intron-Distal	3.10276	3.37567	HepG2	HNRNPK
chr6	47939184	47939241	-	intron-Distal	3.14760	8.98351	HepG2	SUGP2
chr6	48004569	48004654	-	intron-Distal	5.44242	18.13366	HepG2	QKI
chr6	47926259	47926334	-	intron-Distal	3.97828	4.28254	HepG2	MATR3
chr6	47965861	47965909	-	intron-Distal	3.45798	6.71596	HepG2	SUGP2
chr6	47943297	47943414	-	intron-Distal	3.15422	7.74754	HepG2	HLTF
chr6	48032518	48032575	-	intron-Distal	3.06554	7.92053	HepG2	HNRNPL
chr6	47906298	47906356	-	intron-Distal	4.17768	12.89472	HepG2	HNRNPL
chr6	47927196	47927275	-	intron-Distal	5.61818	12.60612	HepG2	SUGP2
chr6	47938519	47938548	-	intron-Distal	3.27409	5.12973	HepG2	MATR3
chr6	47909655	47909734	-	intron-Distal	3.34070	3.27276	HepG2	HNRNPL
chr6	47916189	47916239	-	intron-Distal	3.04354	3.75693	HepG2	HLTF
chr6	47962322	47962356	-	intron-Distal	3.67481	9.30025	HepG2	SUGP2
chr6	47961885	47961974	-	intron-Distal	5.21795	40.16145	HepG2	SUGP2
chr6	47907200	47907269	-	intron-Distal	3.25574	6.95855	HepG2	HNRNPL
chr6	47961260	47961305	-	intron-Distal	3.74538	9.76205	HepG2	SUGP2
chr6	47950018	47950062	-	intron-Distal	3.51882	5.95649	HepG2	HLTF
chr6	47918363	47918398	-	intron-Distal	3.84602	3.16028	HepG2	SUGP2
chr6	47966456	47966518	-	intron-Distal	5.07500	17.30395	HepG2	SUGP2
chr6	47922299	47922354	-	intron-Distal	5.35347	6.93116	HepG2	QKI
chr6	47938622	47938714	-	intron-Distal	3.84054	14.39380	HepG2	SUGP2
chr6	47959085	47959133	-	intron-Distal	4.13314	12.90732	HepG2	SUGP2
chr6	47926002	47926058	-	intron-Distal	3.74303	7.72888	HepG2	HNRNPM
chr6	47961046	47961104	-	intron-Distal	4.41623	19.40189	HepG2	SUGP2
chr6	47938493	47938556	-	intron-Distal	3.63976	11.60265	HepG2	SUGP2
chr6	47961721	47961807	-	intron-Distal	4.29050	22.33513	HepG2	SUGP2
chr6	47957072	47957135	-	intron-Distal	4.40727	3.62238	HepG2	MATR3
chr6	47918140	47918221	-	intron-Distal	5.14617	8.13723	HepG2	PTBP1
chr6	47918221	47918302	-	intron-Distal	3.25382	4.89779	HepG2	PTBP1
chr6	47925194	47925275	-	intron-Distal	5.61481	14.93057	HepG2	CSTF2
chr6	48004507	48004569	-	intron-Distal	3.79703	6.22064	HepG2	QKI
chr6	47938981	47939003	-	intron-Distal	3.31601	6.31916	HepG2	SUGP2
chr6	47946465	47946517	-	intron-Distal	3.78957	3.30829	HepG2	CSTF2
chr6	47938319	47938374	-	intron-Distal	3.44234	10.97318	HepG2	SUGP2
chr6	47936025	47936086	-	intron-Distal	3.24984	3.38316	HepG2	SFPQ
chr6	47966287	47966398	-	intron-Distal	3.36013	14.33101	HepG2	SUGP2
chr6	47959204	47959262	-	intron-Distal	5.68941	51.43241	HepG2	QKI
chr6	47872654	47872769	-	intron-Distal	3.72335	4.19039	HepG2	PTBP1
chr6	47962617	47962659	-	intron-Distal	3.21817	4.67490	HepG2	MATR3
chr6	47937838	47937889	-	intron-Distal	3.83846	13.06499	HepG2	SUGP2
chr6	47866478	47866572	-	intron-Distal	4.19919	14.08473	HepG2	PTBP1
chr6	47938843	47938889	-	intron-Distal	4.62645	16.06120	HepG2	SUGP2
chr6	47962125	47962151	-	intron-Distal	3.86676	6.73852	HepG2	SUGP2
chr6	47942571	47942651	-	intron-Distal	3.35976	4.60931	HepG2	CSTF2
chr6	47926075	47926114	-	intron-Distal	5.01266	5.37406	HepG2	HNRNPM
chr6	47927952	47928029	-	intron-Distal	3.84802	9.81425	HepG2	SUGP2
chr6	47943576	47943672	-	intron-Distal	4.83734	12.76955	HepG2	HLTF
chr6	47859776	47859811	-	intron-Distal	3.24503	3.35377	HepG2	QKI
chr6	47937843	47937907	-	intron-Distal	3.51016	3.83822	HepG2	PTBP1
chr6	47976190	47976251	-	intron-Distal	3.09503	4.55524	HepG2	KHSRP
chr6	47958771	47958815	-	intron-Distal	4.60224	3.62238	HepG2	MATR3
chr6	48006343	48006402	-	intron-Distal	3.02692	5.39438	HepG2	HNRNPC
chr6	47927853	47927916	-	intron-Distal	3.51231	6.28047	HepG2	SUGP2
chr6	47925220	47925276	-	intron-Distal	3.10154	4.74494	HepG2	CSTF2T
chr6	47927789	47927873	-	intron-Distal	3.41051	5.38424	HepG2	HNRNPL
chr6	48032579	48032611	-	intron-Distal	3.31985	4.26114	HepG2	HNRNPL
chr6	47961515	47961548	-	intron-Distal	4.02933	11.08622	HepG2	MATR3
chr6	48019924	48020044	-	intron-Distal	4.47005	15.00987	HepG2	QKI
chr6	47926239	47926328	-	intron-Distal	3.36334	7.46148	HepG2	SUGP2
chr6	47960568	47960609	-	intron-Distal	3.10369	6.22873	HepG2	SUGP2
chr6	47932184	47932253	-	intron-Distal	3.47195	5.47896	HepG2	CSTF2
chr6	47872343	47872429	-	intron-Distal	3.84136	6.82051	HepG2	QKI
chr6	47926017	47926080	-	intron-Distal	3.44058	4.83120	HepG2	MATR3
chr6	48004868	48004929	-	intron-Distal	4.04822	3.98095	HepG2	HNRNPL
chr6	48035225	48035334	-	intron-Distal	5.03436	4.69957	HepG2	SRSF7
chr6	47938963	47939002	-	intron-Distal	4.00730	3.41738	HepG2	PTBP1
chr6	47960550	47960634	-	intron-Distal	3.83555	5.12612	HepG2	HNRNPL
chr6	47947819	47947861	-	intron-Distal	3.20480	4.56843	HepG2	HLTF
chr6	47976245	47976333	-	intron-Distal,intron-Proximal	4.38774	6.08097	HepG2	TIA1
chr6	47919143	47919196	-	intron-Distal	3.44683	3.46325	HepG2	SUGP2
chr6	47931953	47932044	-	intron-Distal	4.39169	7.75161	HepG2	QKI
chr6	47916841	47916909	-	intron-Distal	4.86580	6.35155	HepG2	HNRNPK
chr6	48032440	48032518	-	intron-Distal	3.23319	10.97927	HepG2	HNRNPL
chr6	47961453	47961515	-	intron-Distal	3.67123	6.98117	HepG2	MATR3
chr6	47959225	47959288	-	intron-Distal	3.42361	9.19851	HepG2	HNRNPL
chr6	47960841	47960880	-	intron-Distal	3.84985	12.96142	HepG2	SUGP2
chr6	47945229	47945267	-	intron-Distal	3.97696	5.26073	HepG2	HLTF
chr6	47959218	47959268	-	intron-Distal	4.94783	9.41611	HepG2	MATR3
chr6	48013350	48013402	-	intron-Distal	4.37842	6.03318	HepG2	CSTF2
chr6	47858213	47858285	-	intron-Distal	4.67580	11.16135	HepG2	QKI
chr6	47918314	47918327	-	intron-Distal	4.27035	3.50357	HepG2	QKI
chr6	47941011	47941084	-	intron-Distal	3.96226	3.31824	HepG2	TIAL1
chr6	47935860	47935994	-	intron-Distal	4.13048	13.98435	HepG2	CSTF2
chr6	47932253	47932305	-	intron-Distal	4.14903	5.19843	HepG2	CSTF2
chr6	47871541	47871619	-	intron-Distal	4.02160	6.54646	HepG2	QKI
chr6	47962007	47962044	-	intron-Distal	3.77298	7.91745	HepG2	SUGP2
chr6	47938063	47938138	-	intron-Distal	3.35480	11.89572	HepG2	SUGP2
chr6	47959262	47959296	-	intron-Distal	4.81457	18.10672	HepG2	QKI
chr6	47925275	47925302	-	intron-Distal	4.36647	5.55536	HepG2	CSTF2
chr6	47927547	47927590	-	intron-Distal	3.27076	4.23155	HepG2	MATR3
chr6	47938257	47938319	-	intron-Distal	3.62202	15.86509	HepG2	SUGP2
chr6	47938750	47938804	-	intron-Distal	3.93719	14.42769	HepG2	SUGP2
chr6	47961897	47961976	-	intron-Distal	3.12337	10.07258	HepG2	MATR3
chr6	47995409	47995487	-	intron-Distal	4.28296	3.98095	HepG2	HNRNPL
chr6	47960672	47960725	-	intron-Distal	3.77722	11.16684	HepG2	SUGP2
chr6	47976251	47976298	-	intron-Distal,intron-Proximal	4.82701	7.22833	HepG2	KHSRP
chr6	47923425	47923477	-	intron-Distal	4.88116	7.76609	HepG2	HNRNPL
chr6	47958955	47959009	-	intron-Distal	3.90283	13.06499	HepG2	SUGP2
chr6	48017774	48017831	-	intron-Distal	6.06352	12.57135	HepG2	QKI
chr6	47942950	47942995	-	intron-Distal	3.66228	7.44598	HepG2	HLTF
chr6	47958953	47959078	-	intron-Distal	3.73744	4.97747	HepG2	MATR3
chr6	47922031	47922096	-	intron-Distal	4.11296	4.28548	HepG2	HNRNPC
chr6	47973555	47973654	-	intron-Distal	3.01093	4.18424	HepG2	QKI
chr6	48026875	48026946	-	intron-Distal	4.38128	3.58660	HepG2	ILF3
chr6	47916667	47916778	-	intron-Distal	3.94786	12.00451	HepG2	U2AF2
chr6	48017722	48017774	-	intron-Distal	4.41538	6.41317	HepG2	QKI
chr6	47966743	47966827	-	intron-Distal	3.44982	12.04967	HepG2	SUGP2
chr6	47966900	47966947	-	intron-Distal	3.95721	6.02668	HepG2	SUGP2
chr6	47938492	47938549	-	intron-Distal	3.29538	3.33745	HepG2	HNRNPM
chr6	47887173	47887265	-	intron-Distal	3.02365	4.59863	HepG2	PTBP1
chr6	47948493	47948543	-	intron-Distal	3.20480	6.63189	HepG2	HLTF
chr6	48004425	48004474	-	intron-Distal	3.98406	9.98581	HepG2	QKI
chr6	47900451	47900592	-	intron-Distal	3.17020	5.13388	HepG2	HNRNPL
chr6	47943801	47943925	-	intron-Distal	3.36834	4.63571	HepG2	SAFB
chr6	48017840	48017936	-	intron-Distal	4.20984	9.93837	HepG2	QKI
chr6	47911485	47911541	-	intron-Distal	3.04888	4.92278	HepG2	QKI
chr6	47958695	47958747	-	intron-Distal	3.47687	9.14903	HepG2	SUGP2
chr6	47938578	47938622	-	intron-Distal	3.92282	8.83534	HepG2	SUGP2
chr6	47939123	47939173	-	intron-Distal	4.28727	9.60806	HepG2	MATR3
chr6	47977859	47978004	-	intron-Distal	3.40802	6.39350	HepG2	HNRNPL
chr6	47947420	47947484	-	intron-Distal	4.05782	9.16351	HepG2	HLTF
chr6	47948790	47948821	-	intron-Distal	3.15191	4.90436	HepG2	HLTF
chr6	47949403	47949476	-	intron-Distal	4.04055	15.08678	HepG2	HLTF
chr6	47961730	47961804	-	intron-Distal	5.56230	19.44015	HepG2	MATR3
chr6	47906356	47906432	-	intron-Distal	3.78243	11.65948	HepG2	HNRNPL
chr6	47947016	47947037	-	intron-Distal	3.89798	3.47315	HepG2	CSTF2
chr6	48004354	48004425	-	intron-Distal	4.06283	7.41217	HepG2	QKI
chr6	47941291	47941357	-	intron-Distal	3.33857	6.31016	HepG2	HNRNPK
chr6	47905468	47905554	-	intron-Distal	3.58301	5.58751	HepG2	MATR3
chr6	47958530	47958534	-	intron-Distal	3.47753	4.81844	HepG2	SUGP2
chr6	47939547	47939660	-	intron-Distal	3.00404	12.04105	HepG2	MATR3
chr6	47961201	47961223	-	intron-Distal	3.80021	5.61842	HepG2	MATR3
chr6	47935396	47935456	-	intron-Distal	3.78408	8.01794	HepG2	HLTF
chr6	47937854	47937898	-	intron-Distal	3.86262	5.72064	HepG2	MATR3
chr6	47887907	47887973	-	intron-Distal	3.63280	7.15670	HepG2	HNRNPL
chr6	47949910	47949971	-	intron-Distal	3.51970	8.27490	HepG2	HLTF
chr6	47938720	47938840	-	intron-Distal	3.14929	4.53802	HepG2	HNRNPM
chr6	47939340	47939387	-	intron-Distal	3.36172	8.80382	HepG2	SUGP2
chr6	47887973	47888026	-	intron-Distal	4.21287	9.28461	HepG2	HNRNPL
chr6	47927014	47927068	-	intron-Distal	5.51258	18.16415	HepG2	QKI
chr6	47961514	47961566	-	intron-Distal	4.03111	20.56922	HepG2	SUGP2
chr6	47961548	47961572	-	intron-Distal	4.66306	14.11402	HepG2	MATR3
chr6	47949410	47949464	-	intron-Distal	3.96019	9.73245	HepG2	RBM22
chr6	47919771	47919827	-	intron-Distal	3.63094	14.86122	HepG2	QKI
chr6	47976249	47976327	-	intron-Distal,intron-Proximal	3.21230	3.96838	HepG2	TIAL1
chr6	47939454	47939519	-	intron-Distal	4.66316	19.65089	HepG2	SUGP2
chr6	47998983	47999077	-	intron-Distal	3.89910	3.05187	HepG2	QKI
chr6	47934278	47934339	-	intron-Distal	4.41232	4.15056	HepG2	HLTF
chr6	47938762	47938816	-	intron-Distal	3.63699	7.12108	HepG2	MATR3
chr6	47881988	47882082	-	intron-Distal	3.03012	9.10953	HepG2	HNRNPL
chr6	47927321	47927360	-	intron-Distal	3.79053	4.28254	HepG2	MATR3
chr6	48025440	48025548	-	intron-Distal	3.82247	11.26898	HepG2	HNRNPL
chr6	47961572	47961627	-	intron-Distal	4.90416	10.11929	HepG2	MATR3
chr6	47948330	47948368	-	intron-Distal	3.05109	4.07970	HepG2	HLTF
chr6	47966889	47966960	-	intron-Distal	3.10854	5.28181	HepG2	MATR3
chr6	47958873	47958928	-	intron-Distal	4.57719	18.32725	HepG2	SUGP2
chr6	47960779	47960841	-	intron-Distal	3.95026	22.84460	HepG2	SUGP2
chr6	47966398	47966427	-	intron-Distal	4.72701	6.32237	HepG2	SUGP2
chr6	47941671	47941743	-	intron-Distal	3.80920	3.45317	HepG2	HNRNPL
chr6	47867113	47867239	-	intron-Distal	4.37384	4.77636	HepG2	HNRNPL
chr6	47966981	47967110	-	intron-Distal	3.62303	17.55743	HepG2	SUGP2
chr6	47943204	47943261	-	intron-Distal	4.08225	6.82094	HepG2	HLTF
chr6	47939547	47939663	-	intron-Distal	3.87282	20.18042	HepG2	SUGP2
chr6	47927777	47927853	-	intron-Distal	3.54851	6.05394	HepG2	SUGP2
chr6	47956277	47956351	-	intron-Distal	3.45812	3.40404	HepG2	ILF3
chr6	47949585	47949611	-	intron-Distal	3.50453	4.42924	HepG2	HLTF
chr6	47961332	47961408	-	intron-Distal	4.31561	21.99628	HepG2	SUGP2
chr6	47927728	47927789	-	intron-Distal	3.69549	5.55877	HepG2	HNRNPL
chr6	47958777	47958811	-	intron-Distal	3.75603	8.58268	HepG2	SUGP2
chr6	47926058	47926075	-	intron-Distal	4.19864	6.29995	HepG2	HNRNPM
chr6	47927536	47927596	-	intron-Distal	5.16987	9.84699	HepG2	SUGP2
chr6	47922572	47922616	-	intron-Distal	3.17078	5.39379	HepG2	HNRNPL
chr6	47961119	47961180	-	intron-Distal	4.25253	18.35635	HepG2	SUGP2
chr6	47942689	47942733	-	intron-Distal	3.26757	5.18255	HepG2	HLTF
chr6	47946884	47946944	-	intron-Distal	3.60990	7.15670	HepG2	HNRNPL
chr6	47962175	47962249	-	intron-Distal	3.47057	19.05470	HepG2	SUGP2
chr6	47927992	47928059	-	intron-Distal	5.49637	8.23333	HepG2	MATR3
chr6	47938217	47938263	-	intron-Distal	5.61634	10.40708	HepG2	MATR3
chr6	47947104	47947163	-	intron-Distal	3.54571	7.45054	HepG2	HNRNPL
chr6	47919759	47919771	-	intron-Distal	4.50006	8.42721	HepG2	QKI
chr6	47927859	47927905	-	intron-Distal	3.10084	3.63322	HepG2	MATR3
chr6	47892872	47892970	-	intron-Distal	3.56468	4.70739	HepG2	HNRNPL
chr6	47947163	47947242	-	intron-Distal	3.73922	7.45054	HepG2	HNRNPL
chr6	47946949	47947016	-	intron-Distal	4.09953	14.01484	HepG2	CSTF2
chr6	47945296	47945368	-	intron-Distal	3.95990	8.59069	HepG2	HLTF
chr6	47966763	47966822	-	intron-Distal	3.20921	3.93186	HepG2	MATR3
chr6	48024622	48024718	-	intron-Distal	3.64654	4.73419	HepG2	ILF3
chr6	47957841	47957858	-	intron-Distal	4.98666	7.65425	HepG2	SUGP2
chr6	47961833	47961884	-	intron-Distal	5.16344	18.89405	HepG2	SUGP2
chr6	47961408	47961444	-	intron-Distal	4.24841	16.64379	HepG2	SUGP2
chr6	47972990	47973058	-	intron-Distal	3.91855	3.71677	HepG2	HNRNPL
chr6	47961522	47961579	-	intron-Distal	4.55707	5.57752	HepG2	PTBP1
chr6	47966859	47966900	-	intron-Distal	5.28652	10.57454	HepG2	SUGP2
chr6	47938191	47938257	-	intron-Distal	4.95185	21.74694	HepG2	SUGP2
chr6	47961447	47961514	-	intron-Distal	3.79519	20.48950	HepG2	SUGP2
chr6	47945187	47945270	-	intron-Distal	3.22527	4.84061	HepG2	RBM22
chr6	47959212	47959254	-	intron-Distal	3.52908	9.05469	HepG2	SUGP2
chr6	47919638	47919706	-	intron-Distal	4.43535	8.28561	HepG2	QKI
chr6	47938458	47938488	-	intron-Distal	3.49077	7.20487	HepG2	SUGP2
chr6	47965990	47966077	-	intron-Distal	6.00858	18.96203	HepG2	SUGP2
chr6	47960994	47961033	-	intron-Distal	4.31601	13.41910	HepG2	SUGP2
chr6	47923480	47923551	-	intron-Distal	3.52948	6.90182	HepG2	HNRNPL
chr6	47946944	47947028	-	intron-Distal	3.24438	6.95855	HepG2	HNRNPL
chr6	47920196	47920252	-	intron-Distal	4.03080	3.40087	HepG2	RBFOX2
chr6	47939264	47939315	-	intron-Distal	3.14499	4.69218	HepG2	MATR3
chr6	47959090	47959143	-	intron-Distal	3.87549	4.94624	HepG2	MATR3
chr6	47961196	47961237	-	intron-Distal	3.08298	7.81916	HepG2	SUGP2
chr6	47962058	47962097	-	intron-Distal	3.90727	6.18699	HepG2	MATR3
chr6	47918951	47918982	-	intron-Distal	3.61352	4.70908	HepG2	QKI
chr6	47919427	47919506	-	intron-Distal	3.34876	4.53157	HepG2	MATR3
chr6	47936216	47936277	-	intron-Distal	3.58873	4.35402	HepG2	SUGP2
chr6	47922354	47922459	-	intron-Distal	4.53797	15.71144	HepG2	QKI
chr6	47946517	47946585	-	intron-Distal	3.07125	4.07003	HepG2	CSTF2
chr6	47939243	47939305	-	intron-Distal	4.10954	14.52211	HepG2	SUGP2
chr6	47881680	47881739	-	intron-Distal	3.12422	5.25804	HepG2	HNRNPL
chr6	47938263	47938322	-	intron-Distal	3.69476	9.31718	HepG2	MATR3
chr6	47965933	47965990	-	intron-Distal	3.55260	10.45647	HepG2	SUGP2
chr6	47934879	47934930	-	intron-Distal	4.56504	3.82973	HepG2	HLTF
chr6	47926670	47926714	-	intron-Distal	3.03733	4.67779	HepG2	SUGP2
chr6	47949769	47949826	-	intron-Distal	3.59694	7.16053	HepG2	HLTF
chr6	47919706	47919759	-	intron-Distal	5.18862	13.64458	HepG2	QKI
chr6	47939431	47939526	-	intron-Distal	4.32022	13.23815	HepG2	MATR3
chr6	47939405	47939451	-	intron-Distal	3.60693	8.98661	HepG2	SUGP2
chr6	47918484	47918569	-	intron-Distal	3.51849	8.19300	HepG2	QKI
chr6	47905849	47905877	-	intron-Distal	3.98273	3.15106	HepG2	HNRNPC
chr6	47966518	47966602	-	intron-Distal	3.84155	20.95327	HepG2	SUGP2
chr6	47984674	47984812	-	intron-Distal	4.59525	6.74598	HepG2	QKI
chr6	47959780	47959851	-	intron-Distal	3.78877	10.87416	HepG2	QKI
chr6	47960796	47960836	-	intron-Distal	3.07648	4.97747	HepG2	MATR3
chr6	47859645	47859776	-	intron-Distal	5.03483	11.85119	HepG2	QKI
chr6	47906487	47906549	-	intron-Distal	3.25779	5.88747	HepG2	HNRNPL
chr6	47926930	47926984	-	intron-Distal	3.65638	8.49452	HepG2	SUGP2
chr6	47937773	47937819	-	intron-Distal	3.94276	10.98367	HepG2	SUGP2
chr6	47962377	47962445	-	intron-Distal	3.10623	9.14750	HepG2	SUGP2
chr6	47961645	47961689	-	intron-Distal	3.46171	7.22235	HepG2	SUGP2
chr6	47916481	47916565	-	intron-Distal	3.55204	5.31870	HepG2	RBM22
chr6	47915941	47916087	-	intron-Distal	3.07813	11.56431	HepG2	HLTF
chr6	47960636	47960736	-	intron-Distal	3.83878	4.78196	HepG2	PTBP1
chr6	47962044	47962099	-	intron-Distal	4.17278	16.77355	HepG2	SUGP2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for PTCHD4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PTCHD4 is not available on ENCORE database.
94 RBPs can affect the levels of PTCHD4.

The Knockdown/knockout RNA-Seq assay for PTCHD4 is not available on ENCORE database.

94 RBPs can affect the gene expression of PTCHD4 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PTCHD4	ENSG00000244694.3	1110.58690	786.20110	0.49830	4.62730	3.27120	HepG2	AATF
PTCHD4	ENSG00000244694.3	1678.72400	1143.04800	0.55440	5.08490	3.84770	HepG2	ABCF1
PTCHD4	ENSG00000244694.3	1686.51650	1265.74530	0.41400	3.06980	1.97610	HepG2	AKAP8
PTCHD4	ENSG00000244694.3	1389.72660	1012.24890	0.45710	3.69830	2.79420	HepG2	ASCC1
PTCHD4	ENSG00000244694.3	347.57550	649.39560	-0.90180	7.73920	6.32660	HepG2	BCLAF1
PTCHD4	ENSG00000244694.3	1587.89710	1028.79860	0.62610	7.89680	6.94950	HepG2	BOP1
PTCHD4	ENSG00000244694.3	1390.35920	997.73100	0.47860	5.51330	4.47280	HepG2	CALR
PTCHD4	ENSG00000244694.3	1491.46680	850.11100	0.81090	23.39330	21.88320	HepG2	CKAP4
PTCHD4	ENSG00000244694.3	787.75550	461.64750	0.77090	8.36280	6.66220	HepG2	CSTF2
PTCHD4	ENSG00000244694.3	1110.36830	804.79970	0.46420	2.69100	1.36230	HepG2	CSTF2T
PTCHD4	ENSG00000244694.3	620.00600	1107.49940	-0.83700	16.44270	15.13650	HepG2	CELF1
PTCHD4	ENSG00000244694.3	1493.54270	867.83820	0.78310	11.51400	10.24170	HepG2	DDX21
PTCHD4	ENSG00000244694.3	1146.01160	848.89830	0.43290	4.09360	2.97120	HepG2	DDX24
PTCHD4	ENSG00000244694.3	823.21170	1171.93720	-0.50960	4.01070	3.26910	HepG2	DDX3X
PTCHD4	ENSG00000244694.3	719.22850	1006.58370	-0.48490	3.18450	2.52650	HepG2	DDX6
PTCHD4	ENSG00000244694.3	439.27680	903.89050	-1.04100	15.85830	13.81840	HepG2	DHX30
PTCHD4	ENSG00000244694.3	1110.77730	813.45800	0.44930	5.80100	4.88580	HepG2	DKC1
PTCHD4	ENSG00000244694.3	508.14930	937.16480	-0.88310	15.86520	14.31410	HepG2	DNAJC21
PTCHD4	ENSG00000244694.3	685.02910	928.87130	-0.43930	6.11500	5.20200	HepG2	DNAJC2
PTCHD4	ENSG00000244694.3	168.27980	967.78690	-2.52380	56.06600	53.74030	HepG2	EIF2S1
PTCHD4	ENSG00000244694.3	1028.09880	819.30080	0.32740	2.53000	1.49720	HepG2	EIF3G
PTCHD4	ENSG00000244694.3	1423.99640	1069.58290	0.41280	2.76680	2.12750	HepG2	EIF4A3
PTCHD4	ENSG00000244694.3	1473.89930	1174.83840	0.32710	3.95400	2.98480	HepG2	EIF4G1
PTCHD4	ENSG00000244694.3	723.59860	1125.42960	-0.63720	5.90730	4.73790	HepG2	EIF4G2
PTCHD4	ENSG00000244694.3	1512.54940	990.23820	0.61100	7.09080	5.44210	HepG2	ESF1
PTCHD4	ENSG00000244694.3	2251.46470	1421.09450	0.66380	9.79350	8.77400	HepG2	ETF1
PTCHD4	ENSG00000244694.3	1229.05110	830.88520	0.56470	6.72950	5.43150	HepG2	EWSR1
PTCHD4	ENSG00000244694.3	524.26400	681.50780	-0.37840	2.94580	1.73640	HepG2	FAM120A
PTCHD4	ENSG00000244694.3	160.54160	1154.22630	-2.84590	67.10480	64.33060	HepG2	FIP1L1
PTCHD4	ENSG00000244694.3	473.83950	946.09240	-0.99760	4.79690	3.46560	HepG2	FTO
PTCHD4	ENSG00000244694.3	467.87440	610.94860	-0.38490	2.41480	1.67950	HepG2	FUBP3
PTCHD4	ENSG00000244694.3	711.33930	1001.00460	-0.49280	3.52390	2.77760	HepG2	G3BP1
PTCHD4	ENSG00000244694.3	496.22480	678.74730	-0.45190	3.08220	2.13310	HepG2	GEMIN5
PTCHD4	ENSG00000244694.3	671.90270	924.84470	-0.46100	3.35180	2.22500	HepG2	GNB2L1
PTCHD4	ENSG00000244694.3	1730.14720	1070.72730	0.69220	7.38200	6.36640	HepG2	GPKOW
PTCHD4	ENSG00000244694.3	1566.80800	957.85950	0.70980	4.87440	3.40340	HepG2	GRSF1
PTCHD4	ENSG00000244694.3	1585.45360	1052.40310	0.59110	7.05640	5.99110	HepG2	HNRNPC
PTCHD4	ENSG00000244694.3	536.06570	896.37210	-0.74170	3.43490	1.73030	HepG2	HNRNPD
PTCHD4	ENSG00000244694.3	1681.31620	1415.33960	0.24830	2.91770	2.18210	HepG2	HNRNPF
PTCHD4	ENSG00000244694.3	1669.96470	1393.71540	0.26080	2.32510	1.65960	HepG2	IGF2BP1
PTCHD4	ENSG00000244694.3	1324.77120	1017.53590	0.38060	2.71950	2.04940	HepG2	IGF2BP2
PTCHD4	ENSG00000244694.3	862.82680	1067.88910	-0.30760	3.98470	3.12080	HepG2	ILF2
PTCHD4	ENSG00000244694.3	701.50810	1023.39880	-0.54480	3.45940	2.32190	HepG2	KHSRP
PTCHD4	ENSG00000244694.3	1451.62750	1079.34460	0.42740	3.26240	2.55060	HepG2	MAGOH
PTCHD4	ENSG00000244694.3	797.98020	1085.41740	-0.44380	2.83280	2.19510	HepG2	MATR3
PTCHD4	ENSG00000244694.3	855.04590	1111.01090	-0.37780	2.29260	1.71350	HepG2	NCBP2
PTCHD4	ENSG00000244694.3	569.99150	819.32040	-0.52350	4.60760	2.77400	HepG2	NIP7
PTCHD4	ENSG00000244694.3	809.60700	1306.30820	-0.69020	4.29460	2.51110	HepG2	NKRF
PTCHD4	ENSG00000244694.3	353.04380	674.68890	-0.93440	5.55140	3.97390	HepG2	NONO
PTCHD4	ENSG00000244694.3	313.24080	945.63160	-1.59400	8.79080	7.16630	HepG2	PABPC1
PTCHD4	ENSG00000244694.3	348.20710	989.54640	-1.50680	25.15200	23.04950	HepG2	PABPC4
PTCHD4	ENSG00000244694.3	1485.18510	1032.85180	0.52390	3.15460	2.04660	HepG2	PCBP2
PTCHD4	ENSG00000244694.3	531.68320	869.32030	-0.70930	5.80160	3.45870	HepG2	PHF6
PTCHD4	ENSG00000244694.3	685.11960	932.45500	-0.44470	4.90060	3.94890	HepG2	PPIL4
PTCHD4	ENSG00000244694.3	1037.55100	866.49070	0.25980	2.24740	1.54330	HepG2	PRPF4
PTCHD4	ENSG00000244694.3	1548.04950	1085.79760	0.51160	2.95390	1.69950	HepG2	PRPF6
PTCHD4	ENSG00000244694.3	738.37700	566.86720	0.38120	2.25990	1.52720	HepG2	PRPF8
PTCHD4	ENSG00000244694.3	705.72060	945.74360	-0.42240	2.43460	1.91570	HepG2	PTBP1
PTCHD4	ENSG00000244694.3	1892.15130	1127.24250	0.74710	12.13220	11.00200	HepG2	PUF60
PTCHD4	ENSG00000244694.3	883.79950	1196.59730	-0.43710	7.34170	6.47070	HepG2	PUM1
PTCHD4	ENSG00000244694.3	878.02680	1195.73590	-0.44560	4.88990	4.01160	HepG2	PUM2
PTCHD4	ENSG00000244694.3	635.86470	866.02570	-0.44570	5.57570	4.75690	HepG2	PUS1
PTCHD4	ENSG00000244694.3	630.34900	1024.46060	-0.70060	4.40600	3.64340	HepG2	QKI
PTCHD4	ENSG00000244694.3	1689.45150	1187.74210	0.50820	7.50820	6.75300	HepG2	RBM22
PTCHD4	ENSG00000244694.3	643.33820	929.68950	-0.53120	2.84610	2.16350	HepG2	RBM25
PTCHD4	ENSG00000244694.3	1449.91650	980.21330	0.56470	6.27390	5.39850	HepG2	RECQL
PTCHD4	ENSG00000244694.3	3305.73480	1524.51980	1.11650	12.92430	11.64250	HepG2	RPLP0
PTCHD4	ENSG00000244694.3	1761.39690	1038.36530	0.76230	6.86940	5.61860	HepG2	RPS3A
PTCHD4	ENSG00000244694.3	1405.82520	560.75280	1.32590	20.76960	18.98810	HepG2	RRP9
PTCHD4	ENSG00000244694.3	704.63130	931.01910	-0.40190	4.86530	4.05140	HepG2	SAFB2
PTCHD4	ENSG00000244694.3	448.67120	744.46150	-0.73050	6.86940	5.40230	HepG2	SERBP1
PTCHD4	ENSG00000244694.3	254.48780	820.78030	-1.68940	3.63620	1.91440	HepG2	SFPQ
PTCHD4	ENSG00000244694.3	790.82820	1080.80810	-0.45070	6.69780	5.68230	HepG2	SLBP
PTCHD4	ENSG00000244694.3	1543.13860	1016.08910	0.60270	4.45280	3.21770	HepG2	SMNDC1
PTCHD4	ENSG00000244694.3	1572.68430	1125.37080	0.48270	2.69120	1.92060	HepG2	SNRNP70
PTCHD4	ENSG00000244694.3	2223.85820	1341.45820	0.72920	18.53860	17.54540	HepG2	SRFBP1
PTCHD4	ENSG00000244694.3	1039.94130	699.85900	0.57130	4.61880	2.61140	HepG2	SRP68
PTCHD4	ENSG00000244694.3	1670.52870	1027.85750	0.70060	10.32650	9.54200	HepG2	SRSF1
PTCHD4	ENSG00000244694.3	1315.24610	1112.96340	0.24080	2.26130	1.68840	HepG2	SRSF5
PTCHD4	ENSG00000244694.3	1979.89310	1390.49030	0.50970	10.47240	9.26880	HepG2	SRSF7
PTCHD4	ENSG00000244694.3	1641.35610	1164.61090	0.49490	7.73580	6.96270	HepG2	SSB
PTCHD4	ENSG00000244694.3	1848.74240	1373.08740	0.42900	3.29410	1.89960	HepG2	SSRP1
PTCHD4	ENSG00000244694.3	1058.52860	731.47930	0.53310	3.91420	3.13110	HepG2	SUPV3L1
PTCHD4	ENSG00000244694.3	1692.51960	923.69070	0.87360	19.97450	18.66630	HepG2	TAF15
PTCHD4	ENSG00000244694.3	1443.68660	995.81610	0.53570	5.56850	4.59310	HepG2	TARDBP
PTCHD4	ENSG00000244694.3	746.79200	1024.92530	-0.45670	6.13610	5.35480	HepG2	TRIM56
PTCHD4	ENSG00000244694.3	1362.65510	1101.23500	0.30720	2.47410	1.65050	HepG2	TUFM
PTCHD4	ENSG00000244694.3	526.65650	987.42100	-0.90680	10.76200	9.50230	HepG2	U2AF1
PTCHD4	ENSG00000244694.3	619.26230	1165.61800	-0.91250	10.16950	8.52740	HepG2	UBE2L3
PTCHD4	ENSG00000244694.3	678.72210	1016.14060	-0.58220	8.50260	7.54560	HepG2	UTP3
PTCHD4	ENSG00000244694.3	1524.31730	1096.14070	0.47560	2.81090	1.74830	HepG2	XRCC6
PTCHD4	ENSG00000244694.3	1751.66810	855.13660	1.03440	38.35640	36.44300	HepG2	ZC3H8
PTCHD4	ENSG00000244694.3	548.32980	1157.54040	-1.07790	33.51820	32.15740	HepG2	ZNF622
PTCHD4	ENSG00000244694.3	1432.62980	995.77920	0.52470	3.53190	2.05770	HepG2	ZRANB2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PTCHD4 is not available on ENCORE database.

4 RBPs can affect the splicing of PTCHD4 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	PTCHD4	ENSG00000244694.3	chr6	-	47963256	47963365	47867344	47869671	47976369	47976850	0.21200	0.00005	0.00163	included	HepG2	U2AF1
SE	PTCHD4	ENSG00000244694.3	chr6	-	47963256	47963365	47867344	47869671	47976369	47976850	0.13600	0.00008	0.00157	included	HepG2	U2AF2
SE	PTCHD4	ENSG00000244694.3	chr6	-	47963256	47963365	47845763	47847672	47976369	47976850	0.26500	0.00085	0.05798	included	HepG2	HNRNPL
SE	PTCHD4	ENSG00000244694.3	chr6	-	47963256	47963365	47845763	47847672	47976369	47976850	0.31100	0.00016	0.00568	included	HepG2	SRSF1

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PTCHD4

General Information

Functions

Localization

Domains (AlphaFold: PTCHD4)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PTCHD4 is not avaliable on ENCORE database.

33 proteins are bound to PTCHD4 RNA:

eCLIP assay for PTCHD4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PTCHD4 is not available on ENCORE database.

94 RBPs can affect the gene expression of PTCHD4 :

The Knockdown/knockout RNA-Seq assay for PTCHD4 is not available on ENCORE database.

4 RBPs can affect the splicing of PTCHD4 :

The Knockdown/knockout RNA-Seq assay for PTCHD4 is not avaliable on ENCORE database.