PGLS

General Information

Gene Name : PGLS
Gene ID : ENSG00000130313.6
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: PGLS)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	PGLS	ENSG00000130313.6	11.52	30.01	20.77	ENCSR000AEF
HepG2	PGLS	ENSG00000130313.6	27.89	15.03	21.46	ENCSR985KAT
K562	PGLS	ENSG00000130313.6	19.61	15.91	17.76	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for PGLS is not avaliable on ENCORE database.

Proteins bound to RNA

PGLS RNA is bound by 6 proteins.

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eCLIP assay for PGLS is not avaliable on ENCORE database.

6 proteins are bound to PGLS RNA:

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Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	17622644	17622682	+	CDS	3.28176	13.60354	K562	YBX3
chr19	17622604	17622644	+	CDS	3.15535	11.76100	K562	YBX3
chr19	17622471	17622599	+	5'-UTR,CDS	4.82866	8.86236	K562	DDX3X
chr19	17622520	17622604	+	CDS	4.46796	8.43072	HepG2	DDX3X
chr19	17631877	17631935	+	3'-UTR,CDS	5.25266	7.65809	K562	PABPC4
chr19	17628530	17628584	+	3'-UTR,CDS,intron-Distal	3.71054	5.73361	K562	YBX3
chr19	17631935	17632017	+	3'-UTR	6.19869	5.71015	K562	PABPC4
chr19	17631882	17631938	+	3'-UTR,CDS	4.74942	5.50419	HepG2	LARP4
chr19	17628164	17628199	+	3'-UTR,CDS,intron-Proximal	3.00311	4.97511	K562	YBX3
chr19	17628549	17628656	+	3'-UTR,CDS,intron-Distal	3.55876	4.14411	K562	METAP2
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 14 entries

eCLIP assay for PGLS is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for PGLS is not available on ENCORE database.
83 RBPs can affect the levels of PGLS.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for PGLS is not available on ENCORE database.

83 RBPs can affect the gene expression of PGLS :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
PGLS	ENSG00000130313.2	437.32220	212.39240	1.04190	15.03350	13.48220	HepG2	ILF2
PGLS	ENSG00000130313.2	19.47400	107.24050	-2.46120	11.48960	9.85090	K562	G3BP2
PGLS	ENSG00000130313.2	259.71350	554.07330	-1.09320	10.52690	9.49260	K562	AQR
PGLS	ENSG00000130313.2	376.27470	186.39020	1.01340	10.68090	9.37430	HepG2	DNAJC21
PGLS	ENSG00000130313.2	282.53320	518.52010	-0.87600	9.98900	9.21520	HepG2	SRSF1
PGLS	ENSG00000130313.2	707.13910	414.92370	0.76900	10.37490	9.11930	K562	EIF2S2
PGLS	ENSG00000130313.2	621.04480	396.72510	0.64650	9.48100	8.52100	HepG2	PUM1
PGLS	ENSG00000130313.2	332.99350	185.16880	0.84660	7.80400	6.80250	HepG2	SAFB2
PGLS	ENSG00000130313.2	284.99990	471.31500	-0.72570	8.08350	6.70690	K562	WDR43
PGLS	ENSG00000130313.2	543.55600	359.55160	0.59610	7.27310	6.22680	HepG2	HNRNPL
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 86 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for PGLS is not available on ENCORE database.

8 RBPs can affect the splicing of PGLS :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	PGLS	ENSG00000130313.2	chr19	+	17627179	17627283			17626981	17627089	17628096	17628198	0.08600	0.00000	0.00025	included	HepG2	HNRNPK
SE	PGLS	ENSG00000130313.2	chr19	+	17627179	17627283			17626981	17627089	17628096	17628198	0.06700	0.00000	0.00074	included	K562	NSUN2
SE	PGLS	ENSG00000130313.2	chr19	+	17627179	17627283			17626981	17627089	17628096	17628198	0.07000	0.00000	0.00001	included	K562	HNRNPUL1
SE	PGLS	ENSG00000130313.2	chr19	+	17627179	17627283			17626981	17627089	17628096	17628198	0.06100	0.00001	0.00475	included	K562	MTPAP
SE	PGLS	ENSG00000130313.2	chr19	+	17627179	17627283			17626981	17627089	17628096	17628198	0.05500	0.00001	0.00342	included	K562	UPF1
SE	PGLS	ENSG00000130313.2	chr19	+	17627179	17627283			17626981	17627089	17628096	17628198	0.05500	0.00018	0.00782	included	HepG2	SF3A3
SE	PGLS	ENSG00000130313.2	chr19	+	17628518	17628639			17628096	17628198	17631752	17631852	0.06300	0.00188	0.09923	included	K562	HNRNPUL1
SE	PGLS	ENSG00000130313.2	chr19	+	17627179	17627283			17626981	17627089	17628096	17628198	0.05200	0.00278	0.03295	included	HepG2	U2AF2
MXE	PGLS	ENSG00000130313.2	chr19	+	17628096	17628198	17628518	17628659	17626981	17627089	17631752	17632097	0.23500	0.00350	0.03726	1included	HepG2	SFPQ
SE	PGLS	ENSG00000130313.2	chr19	+	17627179	17627283			17626981	17627089	17628096	17628198	0.15700	0.00504	0.07301	included	K562	U2AF2

Showing 1 to 10 of 10 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

PGLS

General Information

Functions

Localization

Domains (AlphaFold: PGLS)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for PGLS is not avaliable on ENCORE database.

6 proteins are bound to PGLS RNA:

eCLIP assay for PGLS is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for PGLS is not available on ENCORE database.

83 RBPs can affect the gene expression of PGLS :

The Knockdown/knockout RNA-Seq assay for PGLS is not available on ENCORE database.

8 RBPs can affect the splicing of PGLS :

The Knockdown/knockout RNA-Seq assay for PGLS is not avaliable on ENCORE database.