LTBP1

General Information

Gene Name       : LTBP1
Gene ID             : ENSG00000049323.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: LTBP1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878LTBP1ENSG00000049323.150.080.050.07ENCSR000AEF
HepG2LTBP1ENSG00000049323.150.290.250.27ENCSR985KAT
K562LTBP1ENSG00000049323.157.048.057.54ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for LTBP1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • LTBP1 RNA is bound by 8 proteins.  







eCLIP assay for LTBP1 is not avaliable on ENCORE database.





8 proteins are bound to LTBP1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr23362379333623883+3'-UTR5.364277.24744K562PUM2
chr23362362633623681+3'-UTR4.970036.43721K562PUM2
chr23353460633534732+CDS,intron-Distal,intron-Proximal3.988773.24603K562KHSRP
chr23348836733488431+CDS3.784403.02250K562YBX3
chr23357243533572563+CDS4.254996.16207K562TARDBP
chr23341371933413913+CDS3.945183.39858K562IGF2BP2
chr23319818933198264+intron-Distal4.504519.40005K562EXOSC5
chr23319306433193120+intron-Distal4.686976.08953K562EXOSC5
chr23319804933198097+intron-Distal3.894495.50914K562EXOSC5
chr23333944233339520+intron-Distal4.015806.59866K562AGGF1
chr23334045633340511+intron-Distal4.836176.08124K562AGGF1
chr23319726333197297+intron-Distal4.825735.76606K562EXOSC5
chr23327310333273337+intron-Distal6.1887217.99505K562EXOSC5
chr23319682733196869+intron-Distal4.683845.76685K562EXOSC5
chr23319762833197703+intron-Distal4.521899.39985K562EXOSC5
chr23319145433191522+intron-Distal4.428794.80399K562EXOSC5
chr23319277433192877+intron-Distal3.609103.02234K562KHSRP
chr23319719833197221+intron-Distal4.299503.89080K562EXOSC5
chr23319609333196149+intron-Distal4.299507.91405K562EXOSC5
chr23320119133201222+intron-Distal4.097303.01445K562EXOSC5
chr23319663433196699+intron-Distal5.258279.02435K562EXOSC5
chr23319190533191951+intron-Distal4.235283.30687K562EXOSC5
chr23319698733197022+intron-Distal4.457254.48560K562EXOSC5
chr23320152533201577+intron-Distal4.651775.76606K562EXOSC5
chr23333881433338891+intron-Distal4.450917.46553K562AGGF1
chr23319321333193269+intron-Distal4.719036.08869K562EXOSC5
chr23320636933206513+intron-Distal4.007023.01445K562EXOSC5
chr23327195033271999+intron-Distal4.457254.48623K562EXOSC5
chr23319171133191774+intron-Distal3.783295.50914K562EXOSC5
chr23320123733201292+intron-Distal4.914383.78162K562HNRNPM
chr23319655833196581+intron-Distal4.304824.48623K562EXOSC5
chr23320039033200464+intron-Distal5.380899.35180K562EXOSC5
chr23319978633199873+intron-Distal4.302838.21325K562EXOSC5
chr23319278733192856+intron-Distal4.783294.48560K562EXOSC5
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for LTBP1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for LTBP1 is not available on ENCORE database.

  • 114 RBPs can affect the levels of LTBP1.  








The Knockdown/knockout RNA-Seq assay for LTBP1 is not available on ENCORE database.





114 RBPs can affect the gene expression of LTBP1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
LTBP1ENSG00000049323.11353.2606011.373304.9569054.0771052.19730HepG2AKAP1
LTBP1ENSG00000049323.11182.2711040.695702.1630010.632107.34350HepG2APOBEC3C
LTBP1ENSG00000049323.1128.4819085.89870-1.592605.792404.86070HepG2AUH
LTBP1ENSG00000049323.11333.06980121.032201.460306.946006.04580HepG2BOP1
LTBP1ENSG00000049323.11134.8791049.290901.452207.132605.96910HepG2CALR
LTBP1ENSG00000049323.1128.89590102.34960-1.824606.910605.35520HepG2CCAR1
LTBP1ENSG00000049323.11109.4676060.891800.846103.368302.67320HepG2CELF1
LTBP1ENSG00000049323.1127.0472065.43700-1.274602.837002.08670HepG2DAZAP1
LTBP1ENSG00000049323.1111.6255043.39270-1.900203.915002.81590HepG2DDX24
LTBP1ENSG00000049323.1169.9557029.145901.263103.324001.83580HepG2DDX52
LTBP1ENSG00000049323.11253.5867050.593102.3254014.0228012.45970HepG2DDX55
LTBP1ENSG00000049323.1133.881009.364201.855102.739402.12510HepG2DDX6
LTBP1ENSG00000049323.1122.5397053.36470-1.243402.716501.74020HepG2DHX30
LTBP1ENSG00000049323.1128.0495062.50650-1.156002.765902.08890HepG2DKC1
LTBP1ENSG00000049323.1128.1877054.84850-0.960402.155901.56670HepG2DNAJC2
LTBP1ENSG00000049323.1194.4812034.767101.442204.236803.11850HepG2EEF2
LTBP1ENSG00000049323.1176.9164028.976501.408304.011402.67160HepG2EFTUD2
LTBP1ENSG00000049323.1127.754308.993601.625601.965501.45630HepG2EIF2S1
LTBP1ENSG00000049323.1167.3945028.218801.255902.818601.90810HepG2EIF3D
LTBP1ENSG00000049323.1143.650009.680802.172702.712702.02990HepG2EIF4B
LTBP1ENSG00000049323.1122.4290074.23340-1.726705.159203.70940HepG2ESF1
LTBP1ENSG00000049323.1142.3597098.61950-1.219204.601403.86160HepG2ETF1
LTBP1ENSG00000049323.11161.1334042.769401.9135010.991908.98040HepG2FUS
LTBP1ENSG00000049323.11121.4339010.036303.5968018.9584017.32620HepG2FXR1
LTBP1ENSG00000049323.1172.4009025.124001.526804.291603.16440HepG2GEMIN5
LTBP1ENSG00000049323.1114.89090125.99780-3.080905.446204.56790HepG2GPKOW
LTBP1ENSG00000049323.1126.9388062.36900-1.211103.480502.39400HepG2HDGF
LTBP1ENSG00000049323.1129.8437062.13360-1.057902.118401.50220HepG2HNRNPC
LTBP1ENSG00000049323.1159.99630159.46250-1.410305.377804.41810HepG2HNRNPF
LTBP1ENSG00000049323.1121.5112059.59700-1.470203.584502.82370HepG2HNRNPL
LTBP1ENSG00000049323.11166.0104059.708401.475208.960407.41540HepG2HNRNPM
LTBP1ENSG00000049323.1143.72010157.02930-1.844708.722007.50560HepG2IGF2BP1
LTBP1ENSG00000049323.1187.962808.882003.307804.505203.25910HepG2IGF2BP3
LTBP1ENSG00000049323.1124.0837059.71670-1.310103.573002.41330HepG2KIF1C
LTBP1ENSG00000049323.1133.6338070.72450-1.072302.475401.30420HepG2KRR1
LTBP1ENSG00000049323.11228.19050108.106901.077705.525704.33820HepG2LARP4
LTBP1ENSG00000049323.11125.3995057.300401.129802.809001.66670HepG2LARP7
LTBP1ENSG00000049323.1135.9870010.094001.833902.721102.09470HepG2MATR3
LTBP1ENSG00000049323.1183.8743029.530501.505903.261202.11900HepG2METAP2
LTBP1ENSG00000049323.1143.97080122.56480-1.478902.302201.42360HepG2MTPAP
LTBP1ENSG00000049323.1127.6370067.07130-1.279103.262301.70450HepG2NKRF
LTBP1ENSG00000049323.11252.4269046.473202.441306.510304.80730HepG2NONO
LTBP1ENSG00000049323.118.50900106.59410-3.647006.439105.32480HepG2NSUN2
LTBP1ENSG00000049323.1116.2509039.81830-1.292902.108001.34920HepG2PABPC1
LTBP1ENSG00000049323.1114.3944055.05090-1.935305.424204.42230HepG2PPIL4
LTBP1ENSG00000049323.11162.122306.941704.5456029.0162027.61330HepG2PTBP1
LTBP1ENSG00000049323.1125.235907.518001.747002.051101.50190HepG2QKI
LTBP1ENSG00000049323.112342.9978039.061405.9064066.0734063.17660HepG2RAVER1
LTBP1ENSG00000049323.1146.32780102.06790-1.139604.353003.30780HepG2RBM15
LTBP1ENSG00000049323.11313.3783082.428401.9266015.9743014.93770HepG2RBM22
LTBP1ENSG00000049323.11128.0111049.479401.371303.062701.36290HepG2RBM39
LTBP1ENSG00000049323.11129.743107.725404.0698023.4297022.16280HepG2NELFE
LTBP1ENSG00000049323.1155.460807.195202.946308.016507.04890HepG2RECQL
LTBP1ENSG00000049323.11189.1987027.462502.7843021.9592020.48930HepG2RPS19
LTBP1ENSG00000049323.11123.5632063.721800.955303.008202.17430HepG2RPS2
LTBP1ENSG00000049323.11180.9694038.589302.2294013.0595011.56390HepG2RRP9
LTBP1ENSG00000049323.1129.0691057.27600-0.978402.008601.43220HepG2SF3A3
LTBP1ENSG00000049323.116.77540119.03010-4.134907.209406.11680HepG2SF3B1
LTBP1ENSG00000049323.1181.289707.227203.4915013.6048012.44830HepG2SF3B4
LTBP1ENSG00000049323.1122.9826059.42720-1.370602.233801.59220HepG2SLBP
LTBP1ENSG00000049323.11127.2150064.094400.988904.398103.62070HepG2SMN1
LTBP1ENSG00000049323.1126.15590132.43580-2.340103.886702.95220HepG2SNRNP70
LTBP1ENSG00000049323.11821.3569093.101303.14100108.32970106.34040HepG2SRFBP1
LTBP1ENSG00000049323.11121.392007.543604.0082021.9174020.85710HepG2SRSF1
LTBP1ENSG00000049323.1180.66340156.65200-0.957603.162402.42400HepG2SRSF7
LTBP1ENSG00000049323.1121.421306.137101.803302.173301.67210HepG2SRSF9
LTBP1ENSG00000049323.1118.0540080.83630-2.162708.497707.69530HepG2SSB
LTBP1ENSG00000049323.1124.8170070.52840-1.506904.577702.96640HepG2SSRP1
LTBP1ENSG00000049323.1112.1437037.99100-1.645402.966601.82310HepG2STIP1
LTBP1ENSG00000049323.11360.9911069.570102.3753040.4533038.57100HepG2SUCLG1
LTBP1ENSG00000049323.1132.2780071.39340-1.145202.799601.46280HepG2SUGP2
LTBP1ENSG00000049323.11112.0101050.359901.153203.055202.34890HepG2SUPV3L1
LTBP1ENSG00000049323.1123.989706.780501.822901.930301.44740HepG2TAF15
LTBP1ENSG00000049323.1115.3799069.27440-2.171305.856704.36140HepG2TBRG4
LTBP1ENSG00000049323.1177.9202033.751501.206902.873401.85930HepG2TFIP11
LTBP1ENSG00000049323.1125.7353060.51190-1.233503.240302.64080HepG2TRIM56
LTBP1ENSG00000049323.112.8246029.74590-3.396605.644604.55180HepG2UCHL5
LTBP1ENSG00000049323.1110.5022050.79550-2.274005.977005.01350HepG2UPF1
LTBP1ENSG00000049323.11115.2765042.964501.423805.729704.24060HepG2XRCC6
LTBP1ENSG00000049323.1110.4898049.57390-2.240605.098404.12140HepG2XRN2
LTBP1ENSG00000049323.11105.6904055.864700.919703.479102.88560HepG2ZNF622
LTBP1ENSG00000049323.11886.843301214.19780-0.453304.018003.22850K562AKAP8L
LTBP1ENSG00000049323.11982.925001274.00950-0.374203.856902.76380K562ATP5C1
LTBP1ENSG00000049323.111099.196201427.21560-0.376803.567101.31840K562AUH
LTBP1ENSG00000049323.11968.61690760.992700.347903.451701.94850K562BCCIP
LTBP1ENSG00000049323.111545.100901164.035400.408502.329401.32230K562CPEB4
LTBP1ENSG00000049323.113482.999801875.146900.8932025.1163022.61790K562CELF1
LTBP1ENSG00000049323.111317.70280965.114400.449202.907301.66350K562DDX21
LTBP1ENSG00000049323.111400.060401204.677100.216701.976901.40870K562DDX47
LTBP1ENSG00000049323.11924.483901306.48540-0.499006.843505.36340K562DKC1
LTBP1ENSG00000049323.112491.469601525.313000.7078018.7044016.41600K562EIF4G2
LTBP1ENSG00000049323.11606.97010795.46970-0.390202.984001.48560K562G3BP1
LTBP1ENSG00000049323.111110.55760743.687100.578404.958403.02880K562GEMIN5
LTBP1ENSG00000049323.111444.62280935.994900.626008.935307.11040K562HNRNPA1
LTBP1ENSG00000049323.111093.42070830.869900.396102.762201.52840K562HNRNPK
LTBP1ENSG00000049323.11580.93920803.75110-0.468403.087602.10000K562HNRNPM
LTBP1ENSG00000049323.111288.821801036.500400.314203.016702.08670K562HNRNPU
LTBP1ENSG00000049323.11856.360401325.04860-0.629805.099004.03210K562HSPD1
LTBP1ENSG00000049323.111068.38650640.243200.738609.262106.62660K562LARP7
LTBP1ENSG00000049323.111084.31710874.411000.310302.391301.60720K562MAGOH
LTBP1ENSG00000049323.111166.299401668.30660-0.516405.073003.00710K562NOL12
LTBP1ENSG00000049323.111443.00840964.398200.5813013.4948012.02030K562NSUN2
LTBP1ENSG00000049323.112301.848501120.999501.0379016.8804014.87840K562PCBP3
LTBP1ENSG00000049323.11768.372801025.61530-0.416603.016701.38880K562PKM
LTBP1ENSG00000049323.111745.96690859.867801.0217024.0228021.84910K562POLR2G
LTBP1ENSG00000049323.11755.954701109.29780-0.553303.239402.34000K562PPIG
LTBP1ENSG00000049323.11475.06820721.82870-0.603505.025604.01750K562PRPF8
LTBP1ENSG00000049323.11446.62070592.78150-0.408502.704701.81240K562PSIP1
LTBP1ENSG00000049323.11640.94510849.57420-0.406503.520902.78240K562PTBP1
LTBP1ENSG00000049323.112293.776501769.903200.374004.970903.50610K562PUM1
LTBP1ENSG00000049323.111413.166601734.47680-0.295602.673301.72920K562PUM2
LTBP1ENSG00000049323.11540.934101204.06170-1.1544018.3662016.99970K562PUS1
LTBP1ENSG00000049323.11902.190601173.25080-0.379003.652102.98420K562RBM15
LTBP1ENSG00000049323.111352.38090857.104200.657904.096202.73490K562NELFE
LTBP1ENSG00000049323.11823.66740594.501900.470303.115802.04650K562RPS3
LTBP1ENSG00000049323.111072.78940792.081200.437503.554401.90490K562SDAD1
LTBP1ENSG00000049323.11940.93060617.581500.607403.535101.75630K562SERBP1
LTBP1ENSG00000049323.111406.14940951.618100.563206.912605.67030K562SF3A3
LTBP1ENSG00000049323.111003.91840681.075600.559704.231703.00860K562SF3B1
LTBP1ENSG00000049323.11893.28400594.045700.588406.952605.55790K562SF3B4
LTBP1ENSG00000049323.11657.61750477.394900.462003.099401.75600K562SLBP
LTBP1ENSG00000049323.111787.64260974.953600.8746024.3291022.00300K562SRPK2
LTBP1ENSG00000049323.11476.26230832.90980-0.8064010.410209.05290K562SRSF1
LTBP1ENSG00000049323.111167.64100861.447600.438702.820901.64060K562SRSF7
LTBP1ENSG00000049323.111347.96090978.764400.461605.565503.35870K562SRSF9
LTBP1ENSG00000049323.11974.02730698.685300.479203.272102.16160K562SUPV3L1
LTBP1ENSG00000049323.111088.11240862.438000.335202.901102.05960K562SYNCRIP
LTBP1ENSG00000049323.11867.11530570.155800.604805.096003.78780K562TIAL1
LTBP1ENSG00000049323.11783.455301022.57200-0.384304.584603.68400K562UPF1
LTBP1ENSG00000049323.11669.325401220.88350-0.867105.038003.11070K562UTP18
LTBP1ENSG00000049323.111624.502601062.074400.613005.783904.06040K562UTP3
LTBP1ENSG00000049323.111502.13870909.882000.7232018.4072016.50190K562WDR43
LTBP1ENSG00000049323.111810.610101357.793100.415104.082203.00070K562ZC3H8
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for LTBP1 is not available on ENCORE database.





7 RBPs can affect the splicing of LTBP1 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SELTBP1ENSG00000049323.11chr2+334987223349884833488360334884593350003133500157-0.298000.003620.05873excludedK562SRSF1
SELTBP1ENSG00000049323.11chr2+333598593336002733335648333358183341192233412147-0.361000.004720.05953excludedK562PUS1
SELTBP1ENSG00000049323.11chr2+334987223349884833488360334884593350003133500157-0.176000.005750.06921excludedK562PUS1
SELTBP1ENSG00000049323.11chr2+334987223349884833488360334884593350003133500157-0.327000.000090.00261excludedK562U2AF2
SELTBP1ENSG00000049323.11chr2+335679043356803033540210335403363357243333572577-0.348000.000320.01660excludedK562PTBP1
A3SSLTBP1ENSG00000049323.11chr2+3348235033482578334825093348257833477743334779110.247000.000820.00585longerK562AQR
MXELTBP1ENSG00000049323.11chr2+33505105335052253351822633518349335008673350099033525517335256400.086000.007120.070151includedK562DROSHA
MXELTBP1ENSG00000049323.11chr2+3356790433568030335724333357257733540210335403363358566333585846-0.190000.000010.001472includedK562SAFB

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for LTBP1 is not avaliable on ENCORE database.