GRAMD4

General Information

Gene Name : GRAMD4
Gene ID : ENSG00000075240.16
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: GRAMD4)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	GRAMD4	ENSG00000075240.16	4.56	6.44	5.50	ENCSR000AEF
HepG2	GRAMD4	ENSG00000075240.16	9.26	8.31	8.79	ENCSR985KAT
K562	GRAMD4	ENSG00000075240.16	11.07	9.23	10.15	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for GRAMD4 is not avaliable on ENCORE database.

Proteins bound to RNA

GRAMD4 RNA is bound by 31 proteins.

CanvasJS.com

eCLIP assay for GRAMD4 is not avaliable on ENCORE database.

31 proteins are bound to GRAMD4 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr22	47002553	47002670	+	intron-Distal	8.52694	92.40842	HepG2	DROSHA
chr22	47002530	47002657	+	intron-Distal	8.14351	88.09919	K562	DROSHA
chr22	47001743	47001818	+	intron-Distal	8.25941	72.97996	HepG2	RBFOX2
chr22	47002654	47002716	+	intron-Distal	6.44461	71.69530	HepG2	RBFOX2
chr22	47002670	47002784	+	intron-Distal	6.31429	64.71831	HepG2	DROSHA
chr22	47038897	47038980	+	intron-Distal	7.01099	57.66691	K562	AGGF1
chr22	47038829	47038897	+	intron-Distal	7.96657	56.95064	K562	AGGF1
chr22	47002554	47002611	+	intron-Distal	7.60228	56.12407	HepG2	RBFOX2
chr22	47039246	47039317	+	intron-Distal	7.74669	53.18102	K562	AGGF1
chr22	47039088	47039163	+	intron-Distal	7.63639	48.00115	K562	AGGF1
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 192 entries

eCLIP assay for GRAMD4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for GRAMD4 is not available on ENCORE database.
88 RBPs can affect the levels of GRAMD4.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for GRAMD4 is not available on ENCORE database.

88 RBPs can affect the gene expression of GRAMD4 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
GRAMD4	ENSG00000075240.12	342.50460	1088.02510	-1.66750	32.03590	30.23780	K562	AQR
GRAMD4	ENSG00000075240.12	545.21630	229.86520	1.24590	21.92760	20.35960	HepG2	SAFB2
GRAMD4	ENSG00000075240.12	532.52730	250.79610	1.08620	14.13340	13.15620	HepG2	TIAL1
GRAMD4	ENSG00000075240.12	548.65120	925.84970	-0.75490	12.85070	11.55460	K562	DDX47
GRAMD4	ENSG00000075240.12	725.22950	375.37170	0.95000	12.29880	11.16130	HepG2	PUF60
GRAMD4	ENSG00000075240.12	348.33290	632.98270	-0.86170	10.84850	10.04630	HepG2	SRSF1
GRAMD4	ENSG00000075240.12	451.09070	253.05550	0.83390	9.66430	8.70790	HepG2	TRIM56
GRAMD4	ENSG00000075240.12	266.45420	503.71970	-0.91870	9.07310	8.04380	K562	HNRNPC
GRAMD4	ENSG00000075240.12	658.29000	434.89270	0.59800	7.98560	7.18140	HepG2	ZNF622
GRAMD4	ENSG00000075240.12	378.44240	654.35440	-0.79000	9.21100	7.01560	K562	NCBP2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 100 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for GRAMD4 is not available on ENCORE database.

3 RBPs can affect the splicing of GRAMD4 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	GRAMD4	ENSG00000075240.12	chr22	+	47072496	47072565	47071364	47071449	47073043	47075580	-0.16600	0.00045	0.01470	excluded	K562	RBM15
SE	GRAMD4	ENSG00000075240.12	chr22	+	47072496	47072565	47071364	47071449	47073043	47075580	-0.15400	0.00063	0.02178	excluded	K562	AKAP8L
SE	GRAMD4	ENSG00000075240.12	chr22	+	47004149	47004241	46973025	46973187	47022647	47022796	0.08600	0.01110	0.08824	included	K562	AQR

Showing 1 to 3 of 3 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

GRAMD4

General Information

Functions

Localization

Domains (AlphaFold: GRAMD4)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for GRAMD4 is not avaliable on ENCORE database.

31 proteins are bound to GRAMD4 RNA:

eCLIP assay for GRAMD4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for GRAMD4 is not available on ENCORE database.

88 RBPs can affect the gene expression of GRAMD4 :

The Knockdown/knockout RNA-Seq assay for GRAMD4 is not available on ENCORE database.

3 RBPs can affect the splicing of GRAMD4 :

The Knockdown/knockout RNA-Seq assay for GRAMD4 is not avaliable on ENCORE database.