FAM98A

General Information

Gene Name : FAM98A
Gene ID : ENSG00000119812.18
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: FAM98A)

Not Available

Antibody Validation

Bethyl Labs: A305-817A-M

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	FAM98A	ENSG00000119812.18	262.36	156.90	209.63	ENCSR000AEF
HepG2	FAM98A	ENSG00000119812.18	49.31	75.74	62.52	ENCSR985KAT
K562	FAM98A	ENSG00000119812.18	222.68	160.13	191.41	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

GeneName	Antibody_DCC_ID	Product_ID	Lot_ID	Phosphate	HepG2 Primary Validation	K562 Primary Validation	HepG2 Secondary Validation	K562 Secondary Validation
FAM98A		A305-817A-M	1				BGHcLV41-65, Submitted, ENCORE2	BGKcLV40-45, Submitted, ENCORE2

KD RNA-Seq

GeneName	Cell_Line	Method	Exp_ID	Control_ID	Sample_reps	Control_reps	KD%	Status	Project	Note
FAM98A	K562	CRISPR			FAM98A-BGKcLV40-45,FAM98A-BGKcLV40-46	NT-BGKcLV40-1,NT-BGKcLV40-2	93.808,93.2015	Submitting	ENCORE2
FAM98A	HepG2	CRISPR			FAM98A-BGHcLV41-65,FAM98A-BGHcLV41-66	NT-BGHcLV41-1,NT-BGHcLV41-2	67.0,58.3	Submitting	ENCORE2

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela
FAM98A	Product_ID: A305-817A-M Lot_ID: 1 Source: Bethyl Labs Target Name: FAM98A-human

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for FAM98A is not avaliable on ENCORE database.

Proteins bound to RNA

FAM98A RNA is bound by 10 proteins.

CanvasJS.com

eCLIP assay for FAM98A is not avaliable on ENCORE database.

10 proteins are bound to FAM98A RNA:

Show entries

Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr2	33810602	33810677	-	CDS,intron-Distal,intron-Proximal	5.31658	10.50400	K562	LIN28B
chr2	33823875	33823945	-	intron-Distal	4.73419	5.68967	HepG2	PCBP2
chr2	33820625	33820693	-	5'-UTR,CDS,intron-Distal	4.59012	5.56813	HepG2	PPIG
chr2	33809713	33809763	-	3'-UTR,intron-Distal,intron-Proximal	4.14669	5.48330	K562	UPF1
chr2	33809278	33809350	-	3'-UTR,intron-Distal	3.76613	5.35486	K562	UPF1
chr2	33816603	33816749	-	intron-Distal	3.67859	5.35459	K562	KHSRP
chr2	33809716	33809779	-	3'-UTR,intron-Distal,intron-Proximal	3.85977	5.10007	K562	FAM120A
chr2	33810596	33810765	-	CDS,intron-Distal,intron-Proximal	3.16816	4.79538	HepG2	BCLAF1
chr2	33820570	33820704	-	5'-UTR,CDS,intron-Distal	3.61872	4.41784	HepG2	GRWD1
chr2	33817203	33817281	-	5'-UTR,CDS,intron-Distal	3.50989	4.22917	HepG2	PPIG
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 14 entries

eCLIP assay for FAM98A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for FAM98A is not available on ENCORE database.
104 RBPs can affect the levels of FAM98A.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for FAM98A is not available on ENCORE database.

104 RBPs can affect the gene expression of FAM98A :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
FAM98A	ENSG00000119812.14	2975.89030	1154.08620	1.36650	73.74150	72.06510	HepG2	SRSF1
FAM98A	ENSG00000119812.14	325.10360	1163.63450	-1.83970	71.05090	68.45640	HepG2	HNRNPU
FAM98A	ENSG00000119812.14	884.71780	2297.25110	-1.37660	51.87690	48.52350	K562	HNRNPU
FAM98A	ENSG00000119812.14	984.87550	2128.36620	-1.11170	40.91500	39.11430	HepG2	ETF1
FAM98A	ENSG00000119812.14	1050.82460	2131.45370	-1.02030	37.36210	35.02140	K562	MTPAP
FAM98A	ENSG00000119812.14	712.47510	1572.88630	-1.14250	30.40600	28.12430	HepG2	NOL12
FAM98A	ENSG00000119812.14	1978.43730	1043.69570	0.92260	29.70580	28.07740	HepG2	PCBP1
FAM98A	ENSG00000119812.14	1097.60460	2977.56990	-1.43980	25.54130	23.14470	K562	GRSF1
FAM98A	ENSG00000119812.14	2429.59580	4227.20420	-0.79900	25.25520	22.59820	K562	PUM2
FAM98A	ENSG00000119812.14	2209.96140	3717.52860	-0.75030	21.85050	19.39400	K562	EIF4G2
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 129 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for FAM98A is not available on ENCORE database.

2 RBPs can affect the splicing of FAM98A :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A3SS	FAM98A	ENSG00000119812.14	chr2	-	33817146	33817301			33817146	33817281	33820555	33820704	0.07200	0.00000	0.00000	longer	K562	AQR
MXE	FAM98A	ENSG00000119812.14	chr2	-	33810596	33810764	33811628	33811765	33809955	33810511	33812306	33812387	0.05300	0.00000	0.00003	1included	K562	AQR
A5SS	FAM98A	ENSG00000119812.14	chr2	-	33817146	33817301			33817249	33817301	33813401	33813586	-0.08100	0.00028	0.00647	shorter	K562	AQR
SE	FAM98A	ENSG00000119812.14	chr2	-	33813401	33813586			33812306	33812387	33817146	33817281	-0.06600	0.00617	0.08183	excluded	K562	HNRNPC
SE	FAM98A	ENSG00000119812.14	chr2	-	33813401	33813624			33812306	33812387	33817146	33817281	-0.06500	0.00881	0.07337	excluded	K562	AQR

Showing 1 to 5 of 5 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

FAM98A

General Information

Functions

Localization

Domains (AlphaFold: FAM98A)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for FAM98A is not avaliable on ENCORE database.

10 proteins are bound to FAM98A RNA:

eCLIP assay for FAM98A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for FAM98A is not available on ENCORE database.

104 RBPs can affect the gene expression of FAM98A :

The Knockdown/knockout RNA-Seq assay for FAM98A is not available on ENCORE database.

2 RBPs can affect the splicing of FAM98A :

The Knockdown/knockout RNA-Seq assay for FAM98A is not avaliable on ENCORE database.