CTDSPL2

General Information

Gene Name : CTDSPL2
Gene ID : ENSG00000137770.13
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CTDSPL2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CTDSPL2	ENSG00000137770.13	33.90	33.06	33.48	ENCSR000AEF
HepG2	CTDSPL2	ENSG00000137770.13	20.70	25.11	22.91	ENCSR985KAT
K562	CTDSPL2	ENSG00000137770.13	36.16	34.70	35.43	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CTDSPL2 is not avaliable on ENCORE database.

Proteins bound to RNA

CTDSPL2 RNA is bound by 27 proteins.

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eCLIP assay for CTDSPL2 is not avaliable on ENCORE database.

27 proteins are bound to CTDSPL2 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr15	44793288	44793320	+	intron-Distal	7.29282	41.98695	K562	HNRNPM
chr15	44793279	44793288	+	intron-Distal	7.24863	40.66600	K562	HNRNPM
chr15	44793274	44793279	+	intron-Distal	7.22552	39.85209	K562	HNRNPM
chr15	44783039	44783157	+	CDS,intron-Distal	4.84052	25.61660	K562	ZNF622
chr15	44751273	44751371	+	CDS	4.37499	17.65109	K562	ZNF622
chr15	44782977	44783039	+	CDS,intron-Distal,intron-Proximal	3.99414	14.17766	K562	ZNF622
chr15	44789225	44789336	+	CDS	3.16022	13.80134	K562	ZNF622
chr15	44816958	44817015	+	3'-UTR	5.44169	12.48455	K562	TIA1
chr15	44793271	44793317	+	intron-Distal	6.26311	12.04483	HepG2	HNRNPM
chr15	44783423	44783510	+	intron-Distal	3.95536	11.51516	K562	QKI
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 104 entries

eCLIP assay for CTDSPL2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CTDSPL2 is not available on ENCORE database.
120 RBPs can affect the levels of CTDSPL2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CTDSPL2 is not available on ENCORE database.

120 RBPs can affect the gene expression of CTDSPL2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CTDSPL2	ENSG00000137770.9	441.43810	1121.37650	-1.34500	32.28380	30.91540	HepG2	TIAL1
CTDSPL2	ENSG00000137770.9	433.17670	978.07750	-1.17500	31.69170	30.03140	HepG2	PUS1
CTDSPL2	ENSG00000137770.9	571.96780	1184.86320	-1.05070	26.23140	24.87840	HepG2	PTBP1
CTDSPL2	ENSG00000137770.9	657.55880	1372.74870	-1.06190	25.41700	24.16630	HepG2	RBM22
CTDSPL2	ENSG00000137770.9	1413.99120	2232.80630	-0.65910	23.40340	21.55880	K562	NSUN2
CTDSPL2	ENSG00000137770.9	516.43010	1307.08470	-1.33970	23.22000	21.25060	HepG2	ASCC1
CTDSPL2	ENSG00000137770.9	666.79330	1198.43810	-0.84580	22.76810	21.20430	HepG2	SMN1
CTDSPL2	ENSG00000137770.9	563.42770	1153.93000	-1.03430	21.97650	20.38140	HepG2	HNRNPU
CTDSPL2	ENSG00000137770.9	730.56710	1269.16450	-0.79680	21.35470	20.18640	HepG2	ZNF622
CTDSPL2	ENSG00000137770.9	313.16760	871.73980	-1.47700	21.02910	19.47440	HepG2	SUPV3L1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 141 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CTDSPL2 is not available on ENCORE database.

8 RBPs can affect the splicing of CTDSPL2 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CTDSPL2	ENSG00000137770.9	chr15	+	44810851	44811062			44806962	44807042	44811366	44811493	0.18800	0.00000	0.00000	included	K562	AQR
SE	CTDSPL2	ENSG00000137770.9	chr15	+	44806962	44807042			44806795	44806858	44811366	44811493	-0.15700	0.00000	0.00000	excluded	K562	AQR
SE	CTDSPL2	ENSG00000137770.9	chr15	+	44762666	44762772			44751188	44751398	44776421	44776545	0.14900	0.00000	0.00000	included	K562	PUS1
SE	CTDSPL2	ENSG00000137770.9	chr15	+	44762666	44762772			44751188	44751398	44776421	44776545	0.08400	0.00000	0.00000	included	K562	RBM15
MXE	CTDSPL2	ENSG00000137770.9	chr15	+	44811366	44811493	44813508	44813604	44806795	44806858	44816306	44821236	0.12200	0.00000	0.00000	1included	K562	AQR
MXE	CTDSPL2	ENSG00000137770.9	chr15	+	44806962	44807042	44810851	44811062	44806795	44806858	44811366	44811493	-0.13300	0.00000	0.00000	2included	K562	AQR
SE	CTDSPL2	ENSG00000137770.9	chr15	+	44794159	44794246			44791924	44792011	44806795	44806858	0.11600	0.00014	0.00409	included	K562	SRSF1
MXE	CTDSPL2	ENSG00000137770.9	chr15	+	44751188	44751398	44776421	44776560	44719431	44719970	44778748	44778898	0.17900	0.00022	0.01989	1included	K562	TRA2A
SE	CTDSPL2	ENSG00000137770.9	chr15	+	44794159	44794246			44791937	44792011	44806795	44806858	0.07500	0.00034	0.00487	included	K562	AQR
MXE	CTDSPL2	ENSG00000137770.9	chr15	+	44806795	44806858	44806962	44807042	44791924	44792011	44810851	44811062	-0.07100	0.00041	0.00421	2included	K562	AQR

Showing 1 to 10 of 20 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CTDSPL2

General Information

Functions

Localization

Domains (AlphaFold: CTDSPL2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CTDSPL2 is not avaliable on ENCORE database.

27 proteins are bound to CTDSPL2 RNA:

eCLIP assay for CTDSPL2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CTDSPL2 is not available on ENCORE database.

120 RBPs can affect the gene expression of CTDSPL2 :

The Knockdown/knockout RNA-Seq assay for CTDSPL2 is not available on ENCORE database.

8 RBPs can affect the splicing of CTDSPL2 :

The Knockdown/knockout RNA-Seq assay for CTDSPL2 is not avaliable on ENCORE database.