CNTRL

General Information

Gene Name : CNTRL
Gene ID : ENSG00000119397.16
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CNTRL)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CNTRL	ENSG00000119397.16	41.96	36.66	39.31	ENCSR000AEF
HepG2	CNTRL	ENSG00000119397.16	6.58	11.19	8.88	ENCSR985KAT
K562	CNTRL	ENSG00000119397.16	16.03	16.11	16.07	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CNTRL is not avaliable on ENCORE database.

Proteins bound to RNA

CNTRL RNA is bound by 14 proteins.

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eCLIP assay for CNTRL is not avaliable on ENCORE database.

14 proteins are bound to CNTRL RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr9	123896918	123896989	+	intron-Distal	5.48254	11.58578	K562	TARDBP
chr9	123906292	123906370	+	5'-UTR,CDS,intron-Proximal	3.64436	10.43407	K562	ZNF622
chr9	123898097	123898191	+	CDS	3.62610	8.94096	K562	ZNF622
chr9	123914912	123914972	+	CDS,intron-Proximal	4.32898	8.60570	K562	ZNF622
chr9	123888143	123888215	+	CDS,intron-Proximal	4.36675	7.93948	K562	ZNF622
chr9	123903869	123903957	+	intron-Proximal	5.53867	7.81430	K562	AQR
chr9	123898131	123898197	+	CDS	3.82488	7.10975	K562	UCHL5
chr9	123888145	123888208	+	CDS	3.58585	6.71596	K562	UCHL5
chr9	123930553	123930592	+	CDS	4.77832	6.59793	K562	UCHL5
chr9	123916999	123917036	+	CDS	3.95270	6.47664	K562	ZNF622
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 43 entries

eCLIP assay for CNTRL is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CNTRL is not available on ENCORE database.
112 RBPs can affect the levels of CNTRL.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CNTRL is not available on ENCORE database.

112 RBPs can affect the gene expression of CNTRL :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CNTRL	ENSG00000119397.12	296.46090	807.94900	-1.44640	23.53160	21.81570	HepG2	TARDBP
CNTRL	ENSG00000119397.12	2101.53940	3394.52370	-0.69180	22.01770	20.52480	K562	AGGF1
CNTRL	ENSG00000119397.12	2027.59140	3413.07890	-0.75130	19.68830	18.06870	K562	RBM15
CNTRL	ENSG00000119397.12	807.45120	1550.62020	-0.94140	20.28750	17.78530	K562	SF3B4
CNTRL	ENSG00000119397.12	412.42390	1074.19810	-1.38110	19.90510	17.73840	K562	RPS19
CNTRL	ENSG00000119397.12	1996.03300	3532.12970	-0.82340	16.19660	14.37600	K562	AKAP8L
CNTRL	ENSG00000119397.12	1067.07970	1939.99750	-0.86240	16.50940	14.32180	K562	MAGOH
CNTRL	ENSG00000119397.12	1109.78480	1981.62540	-0.83640	15.35380	13.53660	K562	GRSF1
CNTRL	ENSG00000119397.12	695.74760	1135.32080	-0.70650	14.18160	13.28160	HepG2	SRFBP1
CNTRL	ENSG00000119397.12	945.46230	530.79000	0.83280	13.73490	12.62550	HepG2	TAF15
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 138 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CNTRL is not available on ENCORE database.

19 RBPs can affect the splicing of CNTRL :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CNTRL	ENSG00000119397.12	chr9	+	123933685	123933826	123931888	123932094	123935520	123935787	-0.53800	0.00000	0.00000	excluded	K562	SRSF1
SE	CNTRL	ENSG00000119397.12	chr9	+	123933685	123933826	123931888	123932094	123935520	123935787	-0.37900	0.00000	0.00012	excluded	K562	XRCC6
SE	CNTRL	ENSG00000119397.12	chr9	+	123920017	123920158	123919747	123919878	123921132	123921297	-0.75600	0.00000	0.00000	excluded	K562	U2AF2
SE	CNTRL	ENSG00000119397.12	chr9	+	123933685	123933826	123931888	123932094	123935520	123935787	-0.53200	0.00001	0.00066	excluded	HepG2	SRSF1
SE	CNTRL	ENSG00000119397.12	chr9	+	123933685	123933826	123931888	123932094	123935520	123935787	-0.38400	0.00001	0.00025	excluded	K562	HNRNPC
SE	CNTRL	ENSG00000119397.12	chr9	+	123920260	123920387	123919747	123919878	123921132	123921297	-0.30300	0.00002	0.00165	excluded	K562	HNRNPK
SE	CNTRL	ENSG00000119397.12	chr9	+	123933685	123933826	123931888	123932094	123935520	123935787	-0.30800	0.00011	0.00655	excluded	K562	FXR1
A5SS	CNTRL	ENSG00000119397.12	chr9	+	123908385	123908619	123908385	123908534	123910949	123911139	0.09200	0.00011	0.01407	longer	K562	AKAP8L
SE	CNTRL	ENSG00000119397.12	chr9	+	123898083	123898260	123887993	123888214	123900822	123900957	-0.21300	0.00016	0.00463	excluded	K562	SF3B4
SE	CNTRL	ENSG00000119397.12	chr9	+	123928384	123928458	123924347	123924549	123929766	123929955	-0.17800	0.00017	0.00394	excluded	K562	PUS1

Showing 1 to 10 of 33 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CNTRL

General Information

Functions

Localization

Domains (AlphaFold: CNTRL)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CNTRL is not avaliable on ENCORE database.

14 proteins are bound to CNTRL RNA:

eCLIP assay for CNTRL is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CNTRL is not available on ENCORE database.

112 RBPs can affect the gene expression of CNTRL :

The Knockdown/knockout RNA-Seq assay for CNTRL is not available on ENCORE database.

19 RBPs can affect the splicing of CNTRL :

The Knockdown/knockout RNA-Seq assay for CNTRL is not avaliable on ENCORE database.