CHAF1A

General Information

Gene Name : CHAF1A
Gene ID : ENSG00000167670.15
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CHAF1A)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CHAF1A	ENSG00000167670.15	26.14	20.83	23.48	ENCSR000AEF
HepG2	CHAF1A	ENSG00000167670.15	37.44	30.94	34.19	ENCSR985KAT
K562	CHAF1A	ENSG00000167670.15	42.86	30.40	36.63	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CHAF1A is not avaliable on ENCORE database.

Proteins bound to RNA

CHAF1A RNA is bound by 24 proteins.

CanvasJS.com

eCLIP assay for CHAF1A is not avaliable on ENCORE database.

24 proteins are bound to CHAF1A RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr19	4422693	4422793	+	CDS,intron-Distal,intron-Proximal	6.09047	33.38014	K562	UCHL5
chr19	4429798	4429834	+	intron-Proximal	5.98361	25.86760	K562	AQR
chr19	4429768	4429796	+	CDS,intron-Proximal	5.39042	23.89296	K562	AQR
chr19	4402677	4402811	+	5'-UTR,CDS	4.24584	19.15008	K562	DDX3X
chr19	4402693	4402813	+	5'-UTR,CDS,intron-Proximal	4.64673	18.40927	HepG2	DDX3X
chr19	4422677	4422790	+	CDS,intron-Distal	3.53033	17.25606	K562	ZNF800
chr19	4430602	4430639	+	CDS,intron-Proximal	3.53498	16.45406	HepG2	PPIG
chr19	4409331	4409397	+	CDS	3.97848	14.43422	K562	RBM15
chr19	4409470	4409529	+	CDS	5.97896	14.39302	K562	UCHL5
chr19	4429732	4429785	+	CDS	4.95030	14.07362	K562	UCHL5
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 97 entries

eCLIP assay for CHAF1A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CHAF1A is not available on ENCORE database.
128 RBPs can affect the levels of CHAF1A.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CHAF1A is not available on ENCORE database.

128 RBPs can affect the gene expression of CHAF1A :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CHAF1A	ENSG00000167670.11	177.41600	1222.10010	-2.78420	149.35270	147.09410	HepG2	ZNF622
CHAF1A	ENSG00000167670.11	267.00850	1195.14700	-2.16220	90.61760	88.78660	HepG2	SRFBP1
CHAF1A	ENSG00000167670.11	126.36250	1070.71500	-3.08290	77.63290	75.45920	HepG2	BOP1
CHAF1A	ENSG00000167670.11	113.41960	898.10390	-2.98520	75.71150	73.37000	HepG2	RPLP0
CHAF1A	ENSG00000167670.11	247.40730	1058.15470	-2.09660	66.92690	65.05190	HepG2	RBM22
CHAF1A	ENSG00000167670.11	345.69860	1111.19260	-1.68450	59.23200	56.94350	HepG2	UPF1
CHAF1A	ENSG00000167670.11	97.45410	725.15140	-2.89550	58.26770	56.02190	HepG2	SUPV3L1
CHAF1A	ENSG00000167670.11	341.55840	849.02210	-1.31370	35.62160	33.85230	HepG2	CKAP4
CHAF1A	ENSG00000167670.11	545.28460	1266.01530	-1.21520	34.40820	32.71490	HepG2	ETF1
CHAF1A	ENSG00000167670.11	274.08450	835.45440	-1.60790	34.20580	32.12140	HepG2	CALR
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 151 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CHAF1A is not available on ENCORE database.

13 RBPs can affect the splicing of CHAF1A :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CHAF1A	ENSG00000167670.11	chr19	+	4418016	4418073	4408899	4409756	4422562	4422792	-0.19800	0.00001	0.00090	excluded	K562	AKAP8L
SE	CHAF1A	ENSG00000167670.11	chr19	+	4418016	4418073	4408899	4409756	4422562	4422792	0.12600	0.00001	0.00129	included	K562	FXR1
SE	CHAF1A	ENSG00000167670.11	chr19	+	4418016	4418073	4408899	4409756	4422562	4422792	0.09600	0.00010	0.00662	included	K562	PTBP1
A5SS	CHAF1A	ENSG00000167670.11	chr19	+	4418016	4418129	4418016	4418073	4422562	4422792	-0.05900	0.00015	0.05029	shorter	K562	FXR2
SE	CHAF1A	ENSG00000167670.11	chr19	+	4418016	4418073	4408899	4409756	4422562	4422792	-0.15900	0.00033	0.01155	excluded	K562	RBM15
SE	CHAF1A	ENSG00000167670.11	chr19	+	4405908	4405959	4402658	4402811	4408899	4409756	-0.17100	0.00049	0.01568	excluded	K562	AGGF1
SE	CHAF1A	ENSG00000167670.11	chr19	+	4417995	4418129	4409441	4409756	4422562	4422792	0.33900	0.00052	0.00704	included	K562	AQR
SE	CHAF1A	ENSG00000167670.11	chr19	+	4418016	4418073	4408899	4409756	4422562	4422792	0.08400	0.00052	0.07054	included	K562	DROSHA
SE	CHAF1A	ENSG00000167670.11	chr19	+	4418016	4418073	4408899	4409756	4422562	4422792	0.11800	0.00057	0.02994	included	HepG2	SFPQ
SE	CHAF1A	ENSG00000167670.11	chr19	+	4418016	4418073	4408899	4409756	4422562	4422792	0.09200	0.00068	0.09121	included	K562	MATR3

Showing 1 to 10 of 16 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CHAF1A

General Information

Functions

Localization

Domains (AlphaFold: CHAF1A)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CHAF1A is not avaliable on ENCORE database.

24 proteins are bound to CHAF1A RNA:

eCLIP assay for CHAF1A is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CHAF1A is not available on ENCORE database.

128 RBPs can affect the gene expression of CHAF1A :

The Knockdown/knockout RNA-Seq assay for CHAF1A is not available on ENCORE database.

13 RBPs can affect the splicing of CHAF1A :

The Knockdown/knockout RNA-Seq assay for CHAF1A is not avaliable on ENCORE database.