CDHR2

General Information

Gene Name : CDHR2
Gene ID : ENSG00000074276.10
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CDHR2)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CDHR2	ENSG00000074276.10	0.00	0.00	0.00	ENCSR000AEF
HepG2	CDHR2	ENSG00000074276.10	26.52	15.48	21.00	ENCSR985KAT
K562	CDHR2	ENSG00000074276.10	0.03	0.01	0.02	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CDHR2 is not avaliable on ENCORE database.

Proteins bound to RNA

CDHR2 RNA is bound by 15 proteins.

CanvasJS.com

eCLIP assay for CDHR2 is not avaliable on ENCORE database.

15 proteins are bound to CDHR2 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr5	176012720	176012845	+	intron-Distal	7.22726	41.41933	HepG2	RBFOX2
chr5	176012845	176012908	+	intron-Distal,intron-Proximal	6.65476	29.27266	HepG2	RBFOX2
chr5	175976334	175976416	+	5'-UTR,intron-Distal,intron-Proximal	5.13712	13.15062	HepG2	DDX3X
chr5	175992338	175992408	+	3'-UTR,5'-UTR,CDS,intron-Proximal	6.28551	11.95715	HepG2	DDX3X
chr5	176002188	176002263	+	CDS,intron-Proximal	3.26442	11.20046	HepG2	PRPF8
chr5	176002562	176002637	+	CDS,intron-Proximal	4.64444	10.76264	HepG2	PRPF8
chr5	176012012	176012063	+	CDS,intron-Proximal	4.19694	9.08333	HepG2	PRPF8
chr5	176017174	176017260	+	CDS,intron-Proximal	4.84931	8.79061	HepG2	EFTUD2
chr5	175992730	175992780	+	CDS,intron-Proximal	5.23026	8.72621	HepG2	PRPF8
chr5	176012845	176012919	+	intron-Distal,intron-Proximal	3.41315	8.70001	HepG2	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 37 entries

eCLIP assay for CDHR2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CDHR2 is not available on ENCORE database.
106 RBPs can affect the levels of CDHR2.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CDHR2 is not available on ENCORE database.

106 RBPs can affect the gene expression of CDHR2 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CDHR2	ENSG00000074276.6	2631.18550	827.22320	1.66930	97.87560	95.00840	HepG2	SRSF5
CDHR2	ENSG00000074276.6	1830.45390	538.85530	1.76410	95.66340	92.95070	HepG2	SAFB2
CDHR2	ENSG00000074276.6	1665.28950	593.21930	1.48900	50.64550	48.63470	HepG2	TRIM56
CDHR2	ENSG00000074276.6	1691.14730	756.76100	1.16000	38.40600	36.65200	HepG2	DKC1
CDHR2	ENSG00000074276.6	2308.79390	662.17790	1.80170	37.00490	35.08530	HepG2	SUPV3L1
CDHR2	ENSG00000074276.6	3350.91520	837.73530	1.99990	36.70830	34.84520	HepG2	PUF60
CDHR2	ENSG00000074276.6	1962.55480	988.45610	0.98940	35.22080	33.67780	HepG2	SRSF9
CDHR2	ENSG00000074276.6	561.22620	1227.11090	-1.12860	33.01040	31.77890	HepG2	SRFBP1
CDHR2	ENSG00000074276.6	460.53190	1086.45050	-1.23820	28.47120	27.15730	HepG2	RBM22
CDHR2	ENSG00000074276.6	1364.16580	723.04130	0.91580	28.03600	25.29980	HepG2	KIF1C
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 106 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CDHR2 is not available on ENCORE database.

3 RBPs can affect the splicing of CDHR2 :

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Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CDHR2	ENSG00000074276.6	chr5	+	175993946	175994115	175992672	175992744	175995678	175995768	0.24300	0.00007	0.00280	included	HepG2	HNRNPK
A5SS	CDHR2	ENSG00000074276.6	chr5	+	176016528	176016617	176016528	176016588	176017078	176017147	-0.15900	0.00018	0.02465	shorter	HepG2	PCBP1
SE	CDHR2	ENSG00000074276.6	chr5	+	176005034	176005096	176004637	176004799	176005365	176005609	-0.29900	0.00267	0.04598	excluded	HepG2	U2AF1

Showing 1 to 3 of 3 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CDHR2

General Information

Functions

Localization

Domains (AlphaFold: CDHR2)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CDHR2 is not avaliable on ENCORE database.

15 proteins are bound to CDHR2 RNA:

eCLIP assay for CDHR2 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CDHR2 is not available on ENCORE database.

106 RBPs can affect the gene expression of CDHR2 :

The Knockdown/knockout RNA-Seq assay for CDHR2 is not available on ENCORE database.

3 RBPs can affect the splicing of CDHR2 :

The Knockdown/knockout RNA-Seq assay for CDHR2 is not avaliable on ENCORE database.