CAPN1

General Information

Gene Name : CAPN1
Gene ID : ENSG00000014216.15
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CAPN1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CAPN1	ENSG00000014216.15	14.90	52.16	33.53	ENCSR000AEF
HepG2	CAPN1	ENSG00000014216.15	61.85	30.15	46.00	ENCSR985KAT
K562	CAPN1	ENSG00000014216.15	132.16	96.49	114.32	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CAPN1 is not avaliable on ENCORE database.

Proteins bound to RNA

CAPN1 RNA is bound by 32 proteins.

CanvasJS.com

eCLIP assay for CAPN1 is not avaliable on ENCORE database.

32 proteins are bound to CAPN1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr11	64973875	64973951	+	CDS,intron-Proximal	5.47320	33.44555	K562	SF3B4
chr11	64950456	64950587	+	intron-Distal,intron-Proximal	6.45414	19.97156	K562	AKAP8L
chr11	64956245	64956291	+	intron-Proximal	5.63234	19.39840	K562	AQR
chr11	64953401	64953517	+	CDS	4.36615	18.18568	HepG2	PPIG
chr11	64977488	64977563	+	CDS,intron-Proximal	4.76245	18.05445	HepG2	PPIG
chr11	64979342	64979429	+	3'-UTR	3.26613	16.64518	K562	UPF1
chr11	64979344	64979428	+	3'-UTR	3.31634	16.34984	K562	PABPC4
chr11	64977826	64977849	+	CDS	4.13549	15.85943	K562	YBX3
chr11	64979014	64979104	+	3'-UTR	4.33133	15.50228	K562	PCBP1
chr11	64977849	64977856	+	CDS	4.10588	15.41209	K562	YBX3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 122 entries

eCLIP assay for CAPN1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CAPN1 is not available on ENCORE database.
105 RBPs can affect the levels of CAPN1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CAPN1 is not available on ENCORE database.

105 RBPs can affect the gene expression of CAPN1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CAPN1	ENSG00000014216.11	3290.94840	1895.46020	0.79590	38.07780	36.65640	HepG2	ZNF622
CAPN1	ENSG00000014216.11	2294.71060	1266.09470	0.85780	35.67540	33.81530	HepG2	SMN1
CAPN1	ENSG00000014216.11	3139.86220	1835.25100	0.77460	29.90760	28.41560	HepG2	ACO1
CAPN1	ENSG00000014216.11	2903.62960	1665.06090	0.80220	25.09120	23.55720	HepG2	CELF1
CAPN1	ENSG00000014216.11	1045.35230	1852.75930	-0.82570	19.11460	17.83170	HepG2	TAF15
CAPN1	ENSG00000014216.11	1911.40550	1195.24800	0.67720	17.24340	15.99510	HepG2	TRIM56
CAPN1	ENSG00000014216.11	2102.88130	1219.17020	0.78640	16.24690	14.87320	HepG2	HNRNPU
CAPN1	ENSG00000014216.11	2511.92170	1798.91060	0.48160	14.10490	12.98300	HepG2	PUM1
CAPN1	ENSG00000014216.11	2453.32440	4200.36870	-0.77580	14.10520	12.92400	K562	AQR
CAPN1	ENSG00000014216.11	3150.42420	1902.82360	0.72730	13.08920	11.90210	HepG2	SUCLG1
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 123 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CAPN1 is not available on ENCORE database.

19 RBPs can affect the splicing of CAPN1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	FDR	is_included	Cell Line	Affected by RBP
RI	CAPN1	ENSG00000014216.11	chr11	+	64978284	64979476	64978284	64978343	64978730	64979476	0.16300	0.00000	included	K562	PUS1
RI	CAPN1	ENSG00000014216.11	chr11	+	64978284	64979476	64978284	64978343	64978730	64979476	-0.05100	0.00000	excluded	K562	HNRNPC
RI	CAPN1	ENSG00000014216.11	chr11	+	64978284	64979476	64978284	64978343	64978730	64979476	0.10300	0.00000	included	K562	AGGF1
RI	CAPN1	ENSG00000014216.11	chr11	+	64977319	64977567	64977319	64977388	64977488	64977567	0.11800	0.00002	included	K562	PRPF8
RI	CAPN1	ENSG00000014216.11	chr11	+	64978284	64979476	64978284	64978343	64978730	64979476	0.11900	0.00003	included	HepG2	QKI
RI	CAPN1	ENSG00000014216.11	chr11	+	64978284	64979476	64978284	64978343	64978730	64979476	0.16400	0.00000	included	K562	AKAP8L
RI	CAPN1	ENSG00000014216.11	chr11	+	64978284	64979476	64978284	64978343	64978730	64979476	0.12700	0.00000	included	K562	RBM15
RI	CAPN1	ENSG00000014216.11	chr11	+	64978284	64979476	64978284	64978343	64978730	64979476	0.40100	0.00012	included	K562	U2AF2
RI	CAPN1	ENSG00000014216.11	chr11	+	64978284	64979476	64978284	64978343	64978730	64979476	0.12000	0.00000	included	K562	UTP18
RI	CAPN1	ENSG00000014216.11	chr11	+	64977319	64977567	64977319	64977388	64977488	64977567	0.12900	0.00000	included	K562	EFTUD2

Showing 1 to 10 of 24 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CAPN1

General Information

Functions

Localization

Domains (AlphaFold: CAPN1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CAPN1 is not avaliable on ENCORE database.

32 proteins are bound to CAPN1 RNA:

eCLIP assay for CAPN1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CAPN1 is not available on ENCORE database.

105 RBPs can affect the gene expression of CAPN1 :

The Knockdown/knockout RNA-Seq assay for CAPN1 is not available on ENCORE database.

19 RBPs can affect the splicing of CAPN1 :

The Knockdown/knockout RNA-Seq assay for CAPN1 is not avaliable on ENCORE database.