CABIN1

General Information

Gene Name : CABIN1
Gene ID : ENSG00000099991.17
Essential Gene : Yes

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: CABIN1)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	CABIN1	ENSG00000099991.17	6.93	12.79	9.86	ENCSR000AEF
HepG2	CABIN1	ENSG00000099991.17	46.83	21.46	34.14	ENCSR985KAT
K562	CABIN1	ENSG00000099991.17	24.51	22.35	23.43	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for CABIN1 is not avaliable on ENCORE database.

Proteins bound to RNA

CABIN1 RNA is bound by 61 proteins.

CanvasJS.com

eCLIP assay for CABIN1 is not avaliable on ENCORE database.

61 proteins are bound to CABIN1 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr22	24497930	24497989	+	intron-Distal	7.21794	45.88437	HepG2	DGCR8
chr22	24499047	24499147	+	intron-Distal	5.15694	40.45191	HepG2	RBFOX2
chr22	24471634	24471684	+	intron-Distal	5.03207	37.42690	HepG2	DKC1
chr22	24467763	24467867	+	intron-Distal	5.49231	33.92365	HepG2	RBFOX2
chr22	24509512	24509569	+	CDS,intron-Proximal	3.30793	32.51402	HepG2	U2AF2
chr22	24497874	24497930	+	intron-Distal	4.80775	27.66020	HepG2	DGCR8
chr22	24472201	24472258	+	CDS,intron-Proximal	5.20444	26.82267	HepG2	PRPF8
chr22	24508526	24508602	+	intron-Distal	5.67876	26.79551	HepG2	RBFOX2
chr22	24437699	24437761	+	CDS,intron-Distal,intron-Proximal	3.38460	26.21815	HepG2	PRPF8
chr22	24434827	24434910	+	CDS,intron-Proximal	4.15779	26.17921	HepG2	PPIG
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 331 entries

eCLIP assay for CABIN1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for CABIN1 is not available on ENCORE database.
116 RBPs can affect the levels of CABIN1.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for CABIN1 is not available on ENCORE database.

116 RBPs can affect the gene expression of CABIN1 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
CABIN1	ENSG00000099991.12	4529.48580	2323.63410	0.96290	43.99650	42.42320	HepG2	NELFE
CABIN1	ENSG00000099991.12	1308.90660	2839.11830	-1.11710	41.67850	39.71650	HepG2	ZC3H8
CABIN1	ENSG00000099991.12	1407.80830	3407.23110	-1.27510	31.95630	29.96560	HepG2	CPSF6
CABIN1	ENSG00000099991.12	1556.43150	3648.10320	-1.22890	31.84230	29.77260	HepG2	SF3B1
CABIN1	ENSG00000099991.12	5242.42920	2107.59000	1.31450	31.25880	29.24870	HepG2	FXR1
CABIN1	ENSG00000099991.12	1580.69410	4047.93130	-1.35660	28.75050	27.43170	HepG2	RBM22
CABIN1	ENSG00000099991.12	3729.64430	2087.99230	0.83680	26.75530	25.39490	HepG2	PTBP1
CABIN1	ENSG00000099991.12	3706.25810	2268.91080	0.70790	26.20330	25.07250	HepG2	SRSF1
CABIN1	ENSG00000099991.12	4012.50090	2051.88620	0.96750	25.52420	23.99600	HepG2	PCBP1
CABIN1	ENSG00000099991.12	3976.46580	2069.15260	0.94230	23.86820	22.34920	HepG2	RPS19
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 137 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for CABIN1 is not available on ENCORE database.

10 RBPs can affect the splicing of CABIN1 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	CABIN1	ENSG00000099991.12	chr22	+	24484933	24485153	24483540	24483666	24487536	24487967	0.31300	0.00000	0.01759	included	HepG2	FASTKD2
SE	CABIN1	ENSG00000099991.12	chr22	+	24484933	24485153	24483540	24483666	24487536	24487967	0.18100	0.00000	0.00005	included	HepG2	U2AF2
SE	CABIN1	ENSG00000099991.12	chr22	+	24484933	24485153	24483540	24483666	24487536	24487967	0.10400	0.00000	0.00050	included	K562	DROSHA
SE	CABIN1	ENSG00000099991.12	chr22	+	24569870	24569949	24567680	24567963	24572078	24572243	0.13000	0.00000	0.00002	included	K562	HNRNPC
A3SS	CABIN1	ENSG00000099991.12	chr22	+	24445466	24445682	24445552	24445682	24439365	24439546	0.14400	0.00002	0.00597	longer	HepG2	TIAL1
SE	CABIN1	ENSG00000099991.12	chr22	+	24509121	24509350	24493976	24494155	24509532	24509715	0.09000	0.00034	0.03491	included	HepG2	G3BP1
A3SS	CABIN1	ENSG00000099991.12	chr22	+	24431858	24431968	24431891	24431968	24407865	24408178	0.13000	0.00041	0.00311	longer	K562	AQR
SE	CABIN1	ENSG00000099991.12	chr22	+	24437586	24437721	24434795	24434909	24439365	24439546	-0.14400	0.00080	0.08007	excluded	HepG2	SSB
SE	CABIN1	ENSG00000099991.12	chr22	+	24484933	24485153	24483540	24483666	24487536	24487967	0.15200	0.00128	0.05622	included	HepG2	SF3B4
SE	CABIN1	ENSG00000099991.12	chr22	+	24437586	24437721	24434795	24434909	24439365	24439546	-0.17800	0.00261	0.05389	excluded	HepG2	SRSF1

Showing 1 to 10 of 11 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

CABIN1

General Information

Functions

Localization

Domains (AlphaFold: CABIN1)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for CABIN1 is not avaliable on ENCORE database.

61 proteins are bound to CABIN1 RNA:

eCLIP assay for CABIN1 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for CABIN1 is not available on ENCORE database.

116 RBPs can affect the gene expression of CABIN1 :

The Knockdown/knockout RNA-Seq assay for CABIN1 is not available on ENCORE database.

10 RBPs can affect the splicing of CABIN1 :

The Knockdown/knockout RNA-Seq assay for CABIN1 is not avaliable on ENCORE database.