ZNF169

General Information

Gene Name       : ZNF169
Gene ID             : ENSG00000175787.16
Essential Gene : No

Functions

Localization

Domains (AlphaFold: ZNF169)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878ZNF169ENSG00000175787.165.585.765.67ENCSR000AEF
HepG2ZNF169ENSG00000175787.162.993.093.04ENCSR985KAT
K562ZNF169ENSG00000175787.167.255.336.29ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  
  GeneName    Cell_Line    Method    Exp_ID    Control_ID    Sample_reps    Control_reps    KD%    Status    Project    Note  
ZNF169Ribo-STAMP-293TshRNAZNF169-BGRSLV06-53,ZNF169-BGRSLV06-54NT-BGRSLV06-1,NT-BGRSLV06-2,SubmittedENCORE2


  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for ZNF169 is not avaliable on ENCORE database.



Proteins bound to RNA
  • ZNF169 RNA is bound by 4 proteins.  







eCLIP assay for ZNF169 is not avaliable on ENCORE database.





4 proteins are bound to ZNF169 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr99705768897057784+3'-UTR,intron-Distal3.048046.26770K562KHSRP
chr99702160197021721+5'-UTR,intron-Proximal3.380933.40404HepG2NCBP2
chr99702176197021883+intron-Distal4.533996.09831K562HNRNPM
chr99705495497055010+intron-Distal4.760734.67055K562EIF4G2
chr99702564897025735+intron-Distal3.068533.68839K562KHSRP
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for ZNF169 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for ZNF169 is not available on ENCORE database.

  • 35 RBPs can affect the levels of ZNF169.  








The Knockdown/knockout RNA-Seq assay for ZNF169 is not available on ENCORE database.





35 RBPs can affect the gene expression of ZNF169 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
ZNF169ENSG00000175787.12110.6902051.590201.101303.671302.99430HepG2EIF2S1
ZNF169ENSG00000175787.1293.3181038.380201.281704.086703.14020HepG2FUBP3
ZNF169ENSG00000175787.12106.4263053.361900.995903.232802.51640HepG2G3BP1
ZNF169ENSG00000175787.12110.4870054.034801.031803.274302.51610HepG2HNRNPK
ZNF169ENSG00000175787.1295.3264050.360800.920503.240802.59320HepG2PCBP1
ZNF169ENSG00000175787.1283.7552051.258000.708301.840601.37680HepG2PTBP1
ZNF169ENSG00000175787.12119.7664055.483801.110004.527703.75600HepG2QKI
ZNF169ENSG00000175787.1287.8008050.366400.801702.295701.67580HepG2RBM25
ZNF169ENSG00000175787.1294.1576057.033600.723202.048901.56820HepG2NELFE
ZNF169ENSG00000175787.1274.0790045.313000.709001.905001.43110HepG2SRSF9
ZNF169ENSG00000175787.12107.8282050.081901.106304.493603.80530HepG2TAF15
ZNF169ENSG00000175787.1285.9502045.988300.902102.506701.70830HepG2TIA1
ZNF169ENSG00000175787.12205.26060308.76230-0.589003.464602.73090K562AKAP8L
ZNF169ENSG00000175787.12187.62820270.73740-0.529002.581602.01030K562AQR
ZNF169ENSG00000175787.12126.31110251.93050-0.996007.908506.88380K562DDX47
ZNF169ENSG00000175787.12100.93930181.44130-0.846003.548302.08170K562EEF2
ZNF169ENSG00000175787.12285.58380199.633100.516502.895902.16330K562EIF2S2
ZNF169ENSG00000175787.1243.53970111.20880-1.352904.176702.91690K562EIF3A
ZNF169ENSG00000175787.1286.22210147.61340-0.775703.118002.27510K562EIF3G
ZNF169ENSG00000175787.12119.72430174.17920-0.540902.098301.37850K562EIF4A3
ZNF169ENSG00000175787.12236.96380349.99010-0.562603.827002.72540K562EIF4G2
ZNF169ENSG00000175787.12112.68160181.13730-0.684803.198502.55510K562FXR1
ZNF169ENSG00000175787.12156.73520224.49550-0.518402.466701.67020K562MAGOH
ZNF169ENSG00000175787.12121.13920224.05370-0.887205.669704.28600K562MATR3
ZNF169ENSG00000175787.1299.36310172.81190-0.798402.835401.52040K562NONO
ZNF169ENSG00000175787.1298.08490183.90100-0.906804.298101.94970K562PA2G4
ZNF169ENSG00000175787.12330.65960224.921300.555802.987501.36650K562PKM
ZNF169ENSG00000175787.1277.08860170.57210-1.145805.399404.34730K562PRPF8
ZNF169ENSG00000175787.12186.94320110.925800.752903.190702.20910K562PSIP1
ZNF169ENSG00000175787.12130.64350218.10470-0.739404.232503.42730K562PTBP1
ZNF169ENSG00000175787.12263.55840381.86430-0.534902.854702.02620K562PUF60
ZNF169ENSG00000175787.12210.81600298.36460-0.501101.878901.37330K562RBM15
ZNF169ENSG00000175787.1271.29660173.71710-1.284806.521605.25600K562RPS19
ZNF169ENSG00000175787.1267.14960174.37050-1.376706.794704.72730K562RRP9
ZNF169ENSG00000175787.12120.59080177.76760-0.559902.366801.57820K562SF3B4
ZNF169ENSG00000175787.12144.18260205.38290-0.510402.366801.57920K562WDR43
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for ZNF169 is not available on ENCORE database.






No RBPs affect the alternative splcing events of ZNF169 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for ZNF169 is not avaliable on ENCORE database.