TTC39A

General Information

Gene Name       : TTC39A
Gene ID             : ENSG00000085831.15
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TTC39A)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TTC39AENSG00000085831.150.950.820.89ENCSR000AEF
HepG2TTC39AENSG00000085831.150.850.540.70ENCSR985KAT
K562TTC39AENSG00000085831.150.230.180.21ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TTC39A is not avaliable on ENCORE database.



Proteins bound to RNA

  • NO known proteins bind on TTC39A RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for TTC39A is not avaliable on ENCORE database.






NO known proteins are bound to TTC39A RNA with finished eCLIP experiments on ENCORE database.





eCLIP assay for TTC39A is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TTC39A is not available on ENCORE database.

  • 46 RBPs can affect the levels of TTC39A.  








The Knockdown/knockout RNA-Seq assay for TTC39A is not available on ENCORE database.





46 RBPs can affect the gene expression of TTC39A :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TTC39AENSG00000085831.1177.3143023.803301.699504.503003.84620HepG2AKAP1
TTC39AENSG00000085831.1147.9170017.397601.461502.946301.87650HepG2AKAP8
TTC39AENSG00000085831.1160.9255026.799001.184803.011202.21450HepG2AKAP8L
TTC39AENSG00000085831.1117.1933044.86640-1.383802.496501.92480HepG2BOP1
TTC39AENSG00000085831.1145.9184018.714401.294802.359301.64090HepG2CIRBP
TTC39AENSG00000085831.1194.5005022.810702.050507.655406.66210HepG2DDX3X
TTC39AENSG00000085831.11105.1268019.573902.4250010.434809.31880HepG2DDX6
TTC39AENSG00000085831.1164.9467027.488601.240302.977101.82190HepG2AGO1
TTC39AENSG00000085831.1160.8881018.837601.692404.234403.50970HepG2EIF2S1
TTC39AENSG00000085831.1118.0098048.75200-1.436702.087601.34400HepG2EIF4G1
TTC39AENSG00000085831.1118.8877046.70520-1.306102.638201.84150HepG2EIF4G2
TTC39AENSG00000085831.1165.6199028.465101.204802.327501.61740HepG2FIP1L1
TTC39AENSG00000085831.1143.5605019.481801.160802.062801.48430HepG2G3BP1
TTC39AENSG00000085831.1170.9676031.040001.192902.681801.67990HepG2GNB2L1
TTC39AENSG00000085831.1140.8213015.091801.435502.488501.43150HepG2GRSF1
TTC39AENSG00000085831.1126.2081069.77800-1.412803.258302.48530HepG2HNRNPF
TTC39AENSG00000085831.1111.3447044.56550-1.973903.699602.98210HepG2HNRNPLL
TTC39AENSG00000085831.1182.1882019.640702.065007.592806.13700HepG2HNRNPM
TTC39AENSG00000085831.1156.6979018.946601.581303.486702.10210HepG2HSPD1
TTC39AENSG00000085831.1129.6111068.71400-1.214502.317201.65280HepG2IGF2BP1
TTC39AENSG00000085831.1148.2464018.930101.349602.482401.31010HepG2KRR1
TTC39AENSG00000085831.1152.3011021.113601.308602.437201.84240HepG2MATR3
TTC39AENSG00000085831.1165.7780023.039401.513403.800902.85580HepG2MSI2
TTC39AENSG00000085831.1165.3697021.615001.596504.086203.32050HepG2NCBP2
TTC39AENSG00000085831.1112.3409039.51200-1.678802.596801.87120HepG2NSUN2
TTC39AENSG00000085831.1145.0037019.741101.188702.331301.76440HepG2PCBP1
TTC39AENSG00000085831.118.6586031.00570-1.840303.071702.26250HepG2PRPF4
TTC39AENSG00000085831.1199.5502034.674201.521503.671901.63300HepG2PSIP1
TTC39AENSG00000085831.1175.0172020.089401.900706.373705.61080HepG2PTBP1
TTC39AENSG00000085831.1197.3034046.788101.056203.170202.53840HepG2PUF60
TTC39AENSG00000085831.11271.7870049.628302.4531027.2057025.25000HepG2PUM2
TTC39AENSG00000085831.1192.9193045.380301.033803.232802.68440HepG2RBM22
TTC39AENSG00000085831.1123.6793075.12880-1.665704.282103.46190HepG2RPLP0
TTC39AENSG00000085831.1176.8646019.982101.943506.266205.38190HepG2RPS19
TTC39AENSG00000085831.1161.2561020.044901.611503.977902.85190HepG2SERBP1
TTC39AENSG00000085831.1184.7631039.432301.104003.547202.83390HepG2SMN1
TTC39AENSG00000085831.1181.7769030.121801.440804.153102.96190HepG2SMNDC1
TTC39AENSG00000085831.11171.4897017.760403.2713031.0596029.59680HepG2SRSF9
TTC39AENSG00000085831.1111.6226044.49490-1.936704.354203.74100HepG2SSB
TTC39AENSG00000085831.11108.4567052.535301.045702.058901.50720HepG2SUCLG1
TTC39AENSG00000085831.1147.5803019.222401.307502.832901.88190HepG2SUPT6H
TTC39AENSG00000085831.11102.6774038.481401.415804.615803.77570HepG2SUPV3L1
TTC39AENSG00000085831.1181.2808036.908301.138903.450202.90470HepG2TIAL1
TTC39AENSG00000085831.115.6493022.73750-2.008902.296701.60410HepG2UCHL5
TTC39AENSG00000085831.1144.0422016.701401.398802.826701.76950HepG2UTP18
TTC39AENSG00000085831.11231.2829017.868803.6940045.4262043.90500HepG2ZNF622
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TTC39A is not available on ENCORE database.






No RBPs affect the alternative splcing events of TTC39A on ENCORE database.





The Knockdown/knockout RNA-Seq assay for TTC39A is not avaliable on ENCORE database.