TPGS1

General Information

Gene Name       : TPGS1
Gene ID             : ENSG00000141933.9
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TPGS1)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TPGS1ENSG00000141933.90.000.160.08ENCSR000AEF
HepG2TPGS1ENSG00000141933.90.310.130.22ENCSR985KAT
K562TPGS1ENSG00000141933.90.240.200.22ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TPGS1 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TPGS1 RNA is bound by 7 proteins.  







eCLIP assay for TPGS1 is not avaliable on ENCORE database.





7 proteins are bound to TPGS1 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr19508933508990+intron-Distal5.515248.94367K562SLTM
chr19517213517319+intron-Distal5.8183316.16917HepG2CSTF2T
chr19517253517316+intron-Distal5.154384.95161K562GTF2F1
chr19517214517320+intron-Distal4.533613.30242K562FTO
chr19518417518518+intron-Distal5.8979610.50820HepG2FAM120A
chr19512611512712+intron-Distal4.181528.83498K562SLTM
chr19512937512999+intron-Distal3.859784.01653HepG2SLTM
chr19513817513898+intron-Distal3.588683.27276HepG2HNRNPL
chr19509039509114+intron-Distal5.267576.38758HepG2SLTM
chr19508634508690+intron-Distal3.569705.58187HepG2SLTM
chr19512844512932+intron-Distal3.912467.64352K562SLTM
chr19511151511188+intron-Distal4.543984.75882K562SLTM
chr19509855509918+intron-Distal4.177377.24879K562SLTM
chr19512954513031+intron-Distal5.319357.82062K562SLTM
chr19508341508398+intron-Distal4.550966.08348HepG2CSTF2T
chr19510954511021+intron-Distal4.849496.12311K562SLTM
chr19508324508410+intron-Distal4.722759.24794K562SLTM
chr19509078509131+intron-Distal3.905593.34256K562YWHAG
chr19507987508044+intron-Distal5.109916.12311K562SLTM
chr19518598518690+intron-Distal5.035144.36078K562GTF2F1
chr19508340508436+intron-Distal4.709186.46885HepG2FAM120A
chr19517212517315+intron-Distal6.2452520.73411HepG2FAM120A
chr19518782518884+intron-Distal,intron-Proximal5.121686.14086K562GTF2F1
chr19513153513199+intron-Distal4.532624.93122K562SLTM
chr19509058509125+intron-Distal3.628945.82194K562SLTM
chr19512617512713+intron-Distal5.682609.67343HepG2SLTM
chr19510598510685+intron-Distal5.128946.52312K562SLTM
chr19508559508600+intron-Distal5.123918.13349K562SLTM
chr19518757518808+intron-Distal,intron-Proximal5.5357812.04114HepG2FAM120A
chr19510868510924+intron-Distal4.143816.86279K562SLTM
chr19514021514084+intron-Distal4.113043.45317HepG2HNRNPL
chr19510857510921+intron-Distal4.383437.32953HepG2SLTM
chr19507991508049+intron-Distal5.042845.22630HepG2SLTM
chr19508937508999+intron-Distal4.159705.10133HepG2SLTM
chr19508739508814+intron-Distal5.441198.94367K562SLTM
chr19507975508053+intron-Distal5.055188.72481HepG2CSTF2T
chr19518565518691+intron-Distal5.080589.13646HepG2FAM120A
chr19508636508675+intron-Distal4.936306.45102K562SLTM
chr19518042518165+intron-Distal6.0083110.80838HepG2FAM120A
chr19518807518884+intron-Proximal4.856324.46951K562FAM120A
chr19518790518887+intron-Proximal4.010737.72301HepG2CSTF2T
chr19518808518886+intron-Proximal6.1210318.27036HepG2FAM120A
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TPGS1 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TPGS1 is not available on ENCORE database.

  • 37 RBPs can affect the levels of TPGS1.  








The Knockdown/knockout RNA-Seq assay for TPGS1 is not available on ENCORE database.





37 RBPs can affect the gene expression of TPGS1 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TPGS1ENSG00000141933.873.3114043.549300.751301.878801.35990HepG2ACO1
TPGS1ENSG00000141933.827.861307.790801.838302.049501.58390HepG2AKAP1
TPGS1ENSG00000141933.880.2124043.753400.874302.483901.75290HepG2AKAP8L
TPGS1ENSG00000141933.832.775907.460902.135103.162702.49890HepG2DDX3X
TPGS1ENSG00000141933.823.644606.161001.940202.205801.66990HepG2EIF2S1
TPGS1ENSG00000141933.880.1616040.649000.979602.883702.27190HepG2ETF1
TPGS1ENSG00000141933.834.211506.874502.315103.739902.94510HepG2FXR1
TPGS1ENSG00000141933.825.285206.462501.968002.269101.63290HepG2HNRNPK
TPGS1ENSG00000141933.831.251906.083802.360802.407501.49780HepG2IGF2BP3
TPGS1ENSG00000141933.861.1072017.773801.781504.407303.35230HepG2LARP4
TPGS1ENSG00000141933.858.227606.876903.081808.418507.28770HepG2MAGOH
TPGS1ENSG00000141933.8103.059606.914203.8977016.5419015.09750HepG2MATR3
TPGS1ENSG00000141933.838.274507.076102.435304.278303.49690HepG2NCBP2
TPGS1ENSG00000141933.824.337206.513901.901502.365701.66150HepG2NOL12
TPGS1ENSG00000141933.838.663707.948802.282102.892301.77300HepG2NONO
TPGS1ENSG00000141933.822.772604.673602.284603.043902.41240HepG2PCBP1
TPGS1ENSG00000141933.832.085104.758002.753402.736102.19090HepG2PTBP1
TPGS1ENSG00000141933.835.289906.597302.419202.198901.65760HepG2PUM1
TPGS1ENSG00000141933.824.040706.593601.866202.118901.52800HepG2PUM2
TPGS1ENSG00000141933.892.2854033.975501.441505.114204.46390HepG2RBM22
TPGS1ENSG00000141933.841.203305.293202.960505.974505.22960HepG2NELFE
TPGS1ENSG00000141933.828.208404.933602.515303.756003.05260HepG2RECQL
TPGS1ENSG00000141933.842.628804.949303.106406.727205.86930HepG2SF3B4
TPGS1ENSG00000141933.831.315506.135702.351503.867603.14880HepG2SRSF5
TPGS1ENSG00000141933.822.586506.979901.694101.837501.31170HepG2SUCLG1
TPGS1ENSG00000141933.824.147105.756302.068502.206601.30530HepG2TFIP11
TPGS1ENSG00000141933.816.9739036.30880-1.097001.812901.34470HepG2ZNF622
TPGS1ENSG00000141933.823.933305.538302.111402.785001.72890K562CCAR1
TPGS1ENSG00000141933.8103.4020042.494601.282805.241804.38370K562DDX47
TPGS1ENSG00000141933.847.5735023.185301.036801.960601.33670K562EIF2S2
TPGS1ENSG00000141933.874.4833030.892801.269503.155302.35080K562GRSF1
TPGS1ENSG00000141933.894.6948040.829101.213604.474503.33110K562HNRNPU
TPGS1ENSG00000141933.822.9560053.49600-1.220602.613801.81490K562KIF1C
TPGS1ENSG00000141933.825.164907.255601.794102.448501.65460K562MAGOH
TPGS1ENSG00000141933.811.5841042.00590-1.858402.968502.04960K562NAA15
TPGS1ENSG00000141933.837.495007.049302.411105.232604.34290K562PTBP1
TPGS1ENSG00000141933.820.8893049.99120-1.258902.362701.85230K562PUS1
TPGS1ENSG00000141933.840.566606.759402.585204.836803.68730K562RBM22
TPGS1ENSG00000141933.826.403906.910601.933802.530001.84910K562SRSF1
TPGS1ENSG00000141933.842.772106.994002.612406.101305.02000K562TARDBP
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TPGS1 is not available on ENCORE database.






No RBPs affect the alternative splcing events of TPGS1 on ENCORE database.





The Knockdown/knockout RNA-Seq assay for TPGS1 is not avaliable on ENCORE database.