TMEM260

General Information

Gene Name       : TMEM260
Gene ID             : ENSG00000070269.13
Essential Gene : No

Functions

Localization

Domains (AlphaFold: TMEM260)


Antibody Validation

Expression Level in Cell lines

Cell Line Gene Name Ensembl ID Rep1 TPM Rep2 TPM Average TPM Experiment ID
Gm12878TMEM260ENSG00000070269.137.597.267.42ENCSR000AEF
HepG2TMEM260ENSG00000070269.133.345.644.49ENCSR985KAT
K562TMEM260ENSG00000070269.132.874.043.46ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.







  eCLIP  

No eCLIP experiment available



  Antibody Validation  

No Antibody Primary Validation image or Secondary image available



  KD RNA-Seq  

No KD RNA-Seq experiment available



  RNA Bind-n-Seqn  

No RBNS experiment available



  Localization Image in HepG2  

No Localization Information available













RBP Antibody InfoPrimary-HepG2Secondary-HepG2Primary-K562Secondary-K562Primary-UBERONPrimary-Hela








RNA Targets

  • eCLIP assay for TMEM260 is not avaliable on ENCORE database.



Proteins bound to RNA
  • TMEM260 RNA is bound by 2 proteins.  







eCLIP assay for TMEM260 is not avaliable on ENCORE database.





2 proteins are bound to TMEM260 RNA:

Chr Start End Strand Matched Area log2(fold change) -log(p-value) Cell Line Binding Protein Name
chr145709980957099891+3'-UTR,CDS,intron-Proximal4.111843.45943HepG2BCLAF1
chr145706569657065832+intron-Distal3.732043.59771HepG2QKI
ChrStartEndStrandMatched Arealog2(fold change)-log(p-value)Cell LineBinding Protein Name




eCLIP assay for TMEM260 is not avaliable on ENCORE database.



Diffrential Expression

  • The Knockdown/knockout assay for TMEM260 is not available on ENCORE database.

  • 41 RBPs can affect the levels of TMEM260.  








The Knockdown/knockout RNA-Seq assay for TMEM260 is not available on ENCORE database.





41 RBPs can affect the gene expression of TMEM260 :

Gene NameGene IDKDMeanCNMeanlog2(fold change) *-log(pval) **-log(padj) **Cell LineAffected by RBPBound by RBP
TMEM260ENSG00000070269.9195.74020468.36960-1.2587010.897609.90920HepG2AKAP1
TMEM260ENSG00000070269.9515.30580405.397300.346001.985501.32310HepG2CALR
TMEM260ENSG00000070269.9296.20270463.17830-0.645007.055405.95140HepG2DAZAP1
TMEM260ENSG00000070269.9388.06110288.303500.428602.233901.61700HepG2DDX21
TMEM260ENSG00000070269.9256.50140416.51060-0.699403.079402.04890HepG2DDX59
TMEM260ENSG00000070269.9215.76760324.53920-0.588904.494803.69880HepG2DNAJC2
TMEM260ENSG00000070269.9644.90500481.684300.420903.723003.04330HepG2ETF1
TMEM260ENSG00000070269.9207.38420287.77780-0.472602.350601.58150HepG2EWSR1
TMEM260ENSG00000070269.9292.23270413.10410-0.499402.601201.93080HepG2FXR1
TMEM260ENSG00000070269.9274.17790352.50660-0.362501.947501.33900HepG2HNRNPF
TMEM260ENSG00000070269.9175.45710388.01200-1.145009.827608.57980HepG2HNRNPK
TMEM260ENSG00000070269.9173.54370273.58230-0.656703.439102.38680HepG2HNRNPM
TMEM260ENSG00000070269.9181.00880365.24800-1.0128011.3805010.22160HepG2HNRNPU
TMEM260ENSG00000070269.9225.47530391.81480-0.797204.526703.21340HepG2KHSRP
TMEM260ENSG00000070269.9287.87350425.36160-0.563303.086302.41950HepG2NCBP2
TMEM260ENSG00000070269.9285.98720459.28220-0.683406.469405.30760HepG2NOL12
TMEM260ENSG00000070269.9172.05350260.91150-0.600702.113901.35340HepG2PABPC1
TMEM260ENSG00000070269.9226.02670362.48330-0.681404.199103.55600HepG2PTBP1
TMEM260ENSG00000070269.9204.78510438.40210-1.0981011.6435010.53600HepG2PUF60
TMEM260ENSG00000070269.9191.11500299.94830-0.650304.746003.98040HepG2PUS1
TMEM260ENSG00000070269.9569.53550402.605900.500304.474303.85690HepG2RBM22
TMEM260ENSG00000070269.9226.24520325.26560-0.523703.485002.77730HepG2SAFB2
TMEM260ENSG00000070269.9159.94300236.00280-0.561202.312901.45000HepG2SERBP1
TMEM260ENSG00000070269.9258.51250377.46040-0.546102.754302.16360HepG2SF3B4
TMEM260ENSG00000070269.9316.84180454.74100-0.521304.154203.57680HepG2SRFBP1
TMEM260ENSG00000070269.9289.90120422.58830-0.543702.474201.53340HepG2SRSF3
TMEM260ENSG00000070269.9263.53070391.14660-0.569703.205001.83140HepG2SSRP1
TMEM260ENSG00000070269.9393.21660492.26990-0.324102.506901.90980HepG2SUCLG1
TMEM260ENSG00000070269.9229.62020354.88180-0.628104.207903.61950HepG2TIAL1
TMEM260ENSG00000070269.9329.16840428.25620-0.379602.162001.39580HepG2TUFM
TMEM260ENSG00000070269.9257.98220377.89180-0.550703.998103.29740HepG2UTP3
TMEM260ENSG00000070269.9226.70870355.66380-0.649704.891004.17160K562AGGF1
TMEM260ENSG00000070269.9230.56360370.07340-0.682604.819803.94920K562AKAP8L
TMEM260ENSG00000070269.9125.15920188.01110-0.587102.742801.54210K562EIF2S1
TMEM260ENSG00000070269.998.93990176.45140-0.834604.303903.32230K562EIF3G
TMEM260ENSG00000070269.9262.12480178.821500.551602.760101.94010K562EIF4A3
TMEM260ENSG00000070269.9100.88580161.04140-0.674703.031901.80620K562EIF4B
TMEM260ENSG00000070269.992.46670156.09490-0.755402.913301.58150K562EWSR1
TMEM260ENSG00000070269.9261.06100182.094400.519602.369801.81120K562HNRNPC
TMEM260ENSG00000070269.9122.94970220.55160-0.843004.013602.87800K562HNRNPM
TMEM260ENSG00000070269.9120.32210197.15970-0.712503.616702.59580K562HNRNPU
TMEM260ENSG00000070269.9115.55020178.55990-0.627902.543901.36750K562NCBP2
TMEM260ENSG00000070269.9156.50910265.72780-0.763702.454301.53610K562PABPN1
TMEM260ENSG00000070269.9122.64350225.61880-0.879405.701104.77680K562PTBP1
TMEM260ENSG00000070269.9286.38870430.94220-0.589503.486002.57270K562PUF60
TMEM260ENSG00000070269.9169.82330367.08930-1.112109.341408.39370K562PUS1
TMEM260ENSG00000070269.9237.58130357.60860-0.590004.082403.37900K562RBM15
TMEM260ENSG00000070269.9140.65440218.10790-0.632903.400902.09480K562SRSF7
Gene NameGene IDKDMeanCNMeanlog2(fold change)-log(pval)-log(padj)Cell LineAffected by RBPBound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".






The Knockdown/knockout RNA-Seq assay for TMEM260 is not available on ENCORE database.





2 RBPs can affect the splicing of TMEM260 :

Event TypeGene NameGene IDchrStrandExonStartExonEnd2ndExonStart2ndExonEndupstreamESupstreamEEdownstreamESdownstreamEEdPSIp-valueFDRis_includedCell LineAffected by RBPBound by RBP
SETMEM260ENSG00000070269.9chr14+5705983257060035570524115705263057070532570706590.455000.005040.04686includedK562AQR
SETMEM260ENSG00000070269.9chr14+5710183957101994571016165710167057103225571033160.518000.001810.09716includedK562HNRNPL

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".





The Knockdown/knockout RNA-Seq assay for TMEM260 is not avaliable on ENCORE database.