SNAP47

General Information

Gene Name : SNAP47
Gene ID : ENSG00000143740.14
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: SNAP47)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID
Gm12878	SNAP47	ENSG00000143740.14	13.52	14.00	13.76	ENCSR000AEF
HepG2	SNAP47	ENSG00000143740.14	17.09	14.06	15.57	ENCSR985KAT
K562	SNAP47	ENSG00000143740.14	26.62	21.92	24.27	ENCSR000AEO

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for SNAP47 is not avaliable on ENCORE database.

Proteins bound to RNA

SNAP47 RNA is bound by 24 proteins.

eCLIP assay for SNAP47 is not avaliable on ENCORE database.

24 proteins are bound to SNAP47 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	227968662	227968769	+	3'-UTR	4.52982	5.84664	K562	PUM2
chr1	227947153	227947222	+	3'-UTR,CDS,intron-Proximal	3.99651	6.23016	HepG2	PRPF8
chr1	227968391	227968520	+	3'-UTR	4.01878	3.70195	HepG2	UPF1
chr1	227968520	227968603	+	3'-UTR	3.09520	3.27901	HepG2	UPF1
chr1	227954665	227954829	+	CDS,intron-Proximal	3.31843	4.24993	HepG2	PPIG
chr1	227923154	227923203	+	CDS,intron-Distal,intron-Proximal	4.33143	5.07098	K562	DDX3X
chr1	227954662	227954871	+	CDS,intron-Proximal	3.13008	3.85127	HepG2	GRWD1
chr1	227954782	227954840	+	CDS,intron-Proximal	5.08063	17.02742	K562	AQR
chr1	227935426	227935535	+	CDS,intron-Distal	4.35695	8.86236	K562	DDX3X
chr1	227935855	227935931	+	CDS,intron-Distal	3.95030	3.36385	K562	UCHL5
chr1	227935829	227935944	+	CDS,intron-Distal,intron-Proximal	3.14968	3.73997	K562	ZNF622
chr1	227968228	227968275	+	CDS	4.70810	13.90015	K562	AQR
chr1	227947066	227947162	+	CDS	3.97012	3.73926	K562	RBM15
chr1	227954783	227954869	+	CDS,intron-Proximal	4.24068	4.49756	K562	BUD13
chr1	227935392	227935426	+	CDS,intron-Distal,intron-Proximal	4.25266	4.26442	K562	DDX3X
chr1	227947105	227947186	+	CDS	3.56836	3.99908	K562	BUD13
chr1	227955254	227955343	+	intron-Distal	5.90847	5.63630	HepG2	DROSHA
chr1	227932247	227932352	+	intron-Distal	4.17486	6.92189	HepG2	PCBP2
chr1	227955080	227955190	+	intron-Distal	5.75899	15.10225	K562	TARDBP
chr1	227937464	227937563	+	intron-Distal	3.40620	3.88509	K562	SND1
chr1	227923350	227923470	+	intron-Distal	4.75901	7.19649	HepG2	CSTF2T
chr1	227923728	227923835	+	intron-Distal	5.16631	7.22168	HepG2	FAM120A
chr1	227955286	227955350	+	intron-Distal	4.46608	4.14162	K562	RBFOX2
chr1	227948186	227948271	+	intron-Distal	4.94170	8.15874	K562	HNRNPM
chr1	227955350	227955412	+	intron-Distal	3.71810	4.75857	K562	RBFOX2
chr1	227955389	227955431	+	intron-Distal	5.96409	5.63630	HepG2	DROSHA
chr1	227927164	227927240	+	intron-Distal	4.25637	3.63902	HepG2	CSTF2T
chr1	227955190	227955373	+	intron-Distal	6.23386	22.07242	K562	TARDBP
chr1	227955390	227955480	+	intron-Distal	6.00811	13.63751	K562	EIF4G2
chr1	227955343	227955389	+	intron-Distal	5.56182	4.04504	HepG2	DROSHA
chr1	227955433	227955486	+	intron-Distal	5.14237	9.57469	K562	TARDBP
chr1	227929319	227929393	+	intron-Distal	3.81931	3.17740	K562	CSTF2T
chr1	227955085	227955139	+	intron-Distal	4.32665	4.79321	K562	RBFOX2
chr1	227955507	227955584	+	intron-Distal	5.46438	7.07160	K562	EIF4G2
chr1	227923346	227923451	+	intron-Distal	5.26881	6.62861	HepG2	FAM120A
chr1	227965081	227965182	+	intron-Distal	3.75216	3.06347	K562	NONO
chr1	227955496	227955531	+	intron-Distal	4.36646	3.31218	HepG2	DROSHA
chr1	227948190	227948264	+	intron-Distal	4.57622	3.62366	HepG2	HNRNPM
chr1	227955086	227955151	+	intron-Distal	5.02516	4.89579	K562	DDX6
chr1	227955472	227955496	+	intron-Distal	4.26944	4.34058	HepG2	DROSHA
chr1	227955254	227955345	+	intron-Distal	5.53561	4.70434	HepG2	RBFOX2
chr1	227955357	227955542	+	intron-Distal	5.89313	29.64385	K562	DROSHA
chr1	227954941	227954972	+	intron-Distal	3.45979	3.73413	HepG2	RBFOX2
chr1	227955497	227955573	+	intron-Distal	5.89411	7.44079	HepG2	RBFOX2
chr1	227955373	227955489	+	intron-Distal	5.96139	7.11943	K562	DDX6
chr1	227929294	227929371	+	intron-Distal	3.33279	4.37279	HepG2	CSTF2T
chr1	227955373	227955433	+	intron-Distal	5.57089	11.00963	K562	TARDBP
chr1	227955117	227955153	+	intron-Distal	4.47248	4.98530	K562	DROSHA
chr1	227923835	227923913	+	intron-Distal	4.93945	6.03756	HepG2	FAM120A
chr1	227955498	227955556	+	intron-Distal	4.12383	3.93366	K562	RBFOX2
chr1	227923538	227923704	+	intron-Distal	6.19399	13.21421	HepG2	FAM120A
chr1	227955412	227955472	+	intron-Distal	3.97908	7.53000	K562	RBFOX2
chr1	227955503	227955573	+	intron-Distal	3.14368	4.49883	K562	TARDBP
chr1	227955431	227955472	+	intron-Distal	4.95241	7.96684	HepG2	DROSHA
chr1	227955388	227955499	+	intron-Distal	6.07395	6.69377	HepG2	DKC1
chr1	227955225	227955353	+	intron-Distal	5.93758	19.66728	K562	DROSHA
chr1	227954956	227955064	+	intron-Distal	3.00065	3.42428	K562	HNRNPL
chr1	227955367	227955480	+	intron-Distal	6.81753	15.95334	HepG2	RBFOX2
chr1	227968176	227968228	+	intron-Proximal	6.24495	14.81397	K562	AQR
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for SNAP47 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for SNAP47 is not available on ENCORE database.
36 RBPs can affect the levels of SNAP47.

The Knockdown/knockout RNA-Seq assay for SNAP47 is not available on ENCORE database.

36 RBPs can affect the gene expression of SNAP47 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
SNAP47	ENSG00000143740.10	409.66380	219.88150	0.89760	4.94280	3.91570	HepG2	CNOT7
SNAP47	ENSG00000143740.10	132.62570	219.00170	-0.72360	2.43710	1.51930	HepG2	DDX59
SNAP47	ENSG00000143740.10	133.14100	208.62030	-0.64790	2.60210	1.98840	HepG2	HNRNPLL
SNAP47	ENSG00000143740.10	254.70220	195.62200	0.38060	1.82140	1.32020	HepG2	HNRNPU
SNAP47	ENSG00000143740.10	562.42220	368.38500	0.61030	3.78740	3.05890	HepG2	MATR3
SNAP47	ENSG00000143740.10	458.56970	322.07700	0.50960	4.81960	4.08190	HepG2	PUM1
SNAP47	ENSG00000143740.10	415.61600	321.83730	0.36880	2.06300	1.47850	HepG2	PUM2
SNAP47	ENSG00000143740.10	302.96610	413.31760	-0.44810	2.60280	1.99370	HepG2	QKI
SNAP47	ENSG00000143740.10	321.61090	225.09390	0.51470	2.06240	1.36530	HepG2	RPS2
SNAP47	ENSG00000143740.10	403.02880	287.34850	0.48800	2.37930	1.75550	HepG2	SF3A3
SNAP47	ENSG00000143740.10	434.78030	299.56940	0.53730	4.50420	3.73980	HepG2	SRSF5
SNAP47	ENSG00000143740.10	454.52000	340.68570	0.41580	3.09650	2.44570	HepG2	SUCLG1
SNAP47	ENSG00000143740.10	207.18170	372.66520	-0.84700	5.49550	4.75130	HepG2	TAF15
SNAP47	ENSG00000143740.10	249.82600	342.50660	-0.45520	2.11320	1.38090	HepG2	TIA1
SNAP47	ENSG00000143740.10	254.76950	190.11640	0.42220	1.82460	1.40060	HepG2	TIAL1
SNAP47	ENSG00000143740.10	338.80740	246.03140	0.46150	2.79860	2.19880	HepG2	UTP3
SNAP47	ENSG00000143740.10	848.98380	645.58910	0.39500	4.04810	3.38540	K562	AGGF1
SNAP47	ENSG00000143740.10	610.65870	480.06710	0.34700	2.59970	1.34680	K562	DDX6
SNAP47	ENSG00000143740.10	406.18940	308.75460	0.39560	2.36810	1.62910	K562	EIF3G
SNAP47	ENSG00000143740.10	682.63990	494.69080	0.46450	3.53920	2.61470	K562	EIF4A3
SNAP47	ENSG00000143740.10	573.70860	445.49420	0.36480	2.72100	1.58170	K562	EIF4B
SNAP47	ENSG00000143740.10	586.09080	407.48940	0.52430	3.87970	2.86480	K562	FIP1L1
SNAP47	ENSG00000143740.10	664.03270	514.45730	0.36810	2.90820	2.29010	K562	FXR1
SNAP47	ENSG00000143740.10	1187.18940	930.56500	0.35130	2.76850	2.01230	K562	GRSF1
SNAP47	ENSG00000143740.10	461.26500	335.17610	0.46060	2.38220	1.52100	K562	HNRNPM
SNAP47	ENSG00000143740.10	708.91630	552.45460	0.35970	2.13600	1.43370	K562	HSPD1
SNAP47	ENSG00000143740.10	719.93830	417.17800	0.78710	6.49090	4.63690	K562	IGF2BP2
SNAP47	ENSG00000143740.10	579.89260	438.26550	0.40390	2.69430	1.86590	K562	MAGOH
SNAP47	ENSG00000143740.10	586.41040	428.48450	0.45260	3.48190	1.95990	K562	PCBP1
SNAP47	ENSG00000143740.10	658.36760	462.59580	0.50900	3.85860	2.86540	K562	PPIG
SNAP47	ENSG00000143740.10	590.23230	425.81530	0.47100	3.78080	3.01620	K562	PTBP1
SNAP47	ENSG00000143740.10	789.36570	649.11750	0.28210	2.04000	1.51660	K562	RBM15
SNAP47	ENSG00000143740.10	527.85440	408.21200	0.37070	2.17360	1.43300	K562	RBM22
SNAP47	ENSG00000143740.10	603.75260	417.46030	0.53220	4.30110	3.42450	K562	SRSF1
SNAP47	ENSG00000143740.10	565.59530	394.30760	0.52030	3.82070	2.54990	K562	SRSF5
SNAP47	ENSG00000143740.10	677.19570	422.45540	0.68070	6.17400	5.08140	K562	TARDBP
SNAP47	ENSG00000143740.10	587.84280	407.51690	0.52850	4.26600	3.21720	K562	TIA1
SNAP47	ENSG00000143740.10	584.83400	399.99380	0.54790	4.19000	2.79940	K562	TRA2A
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for SNAP47 is not available on ENCORE database.

4 RBPs can affect the splicing of SNAP47 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
SE	SNAP47	ENSG00000143740.10	chr1	+	227935392	227935934	227922696	227923200	227946695	227947186	-0.22200	0.00097	0.02031	excluded	K562	SRSF1
SE	SNAP47	ENSG00000143740.10	chr1	+	227935392	227935934	227922696	227923200	227946695	227947186	-0.32900	0.00000	0.00001	excluded	K562	PUS1
SE	SNAP47	ENSG00000143740.10	chr1	+	227935392	227935934	227922696	227923200	227946695	227947186	-0.25600	0.00012	0.00674	excluded	K562	UTP18
SE	SNAP47	ENSG00000143740.10	chr1	+	227935392	227935934	227922696	227923200	227946695	227947186	-0.28600	0.00229	0.03906	excluded	K562	U2AF2

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

SNAP47

General Information

Functions

Localization

Domains (AlphaFold: SNAP47)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for SNAP47 is not avaliable on ENCORE database.

24 proteins are bound to SNAP47 RNA:

eCLIP assay for SNAP47 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for SNAP47 is not available on ENCORE database.

36 RBPs can affect the gene expression of SNAP47 :

The Knockdown/knockout RNA-Seq assay for SNAP47 is not available on ENCORE database.

4 RBPs can affect the splicing of SNAP47 :

The Knockdown/knockout RNA-Seq assay for SNAP47 is not avaliable on ENCORE database.