RP11-435B5.4

General Information

Gene Name : RP11-435B5.4
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP11-435B5.4)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP11-435B5.4 is not avaliable on ENCORE database.

Proteins bound to RNA

RP11-435B5.4 RNA is bound by 26 proteins.

eCLIP assay for RP11-435B5.4 is not avaliable on ENCORE database.

26 proteins are bound to RP11-435B5.4 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr1	143414915	143414994	-	intron-Distal	4.73522	11.74241	K562	HNRNPK
chr1	143378860	143378929	-	intron-Distal	3.63113	5.47496	K562	MATR3
chr1	143450298	143450347	-	intron-Distal	3.37526	15.23116	K562	EXOSC5
chr1	143443276	143443351	-	intron-Distal	3.31883	5.95025	K562	MATR3
chr1	143440432	143440503	-	intron-Distal	3.19893	11.56820	K562	GTF2F1
chr1	143456952	143456993	-	intron-Distal	3.92166	3.31905	K562	NONO
chr1	143451757	143451799	-	intron-Distal	4.32682	5.25643	K562	ILF3
chr1	143422499	143422548	-	intron-Distal	3.94267	7.28460	K562	HNRNPM
chr1	143399149	143399312	-	intron-Distal	4.46362	7.80006	K562	QKI
chr1	143424852	143424884	-	intron-Distal	4.01499	3.30687	K562	EXOSC5
chr1	143452238	143452310	-	intron-Distal	3.79950	12.73030	K562	EXOSC5
chr1	143452249	143452301	-	intron-Distal	4.20800	3.62238	HepG2	MATR3
chr1	143450702	143450745	-	intron-Distal	3.10784	4.34882	K562	EXOSC5
chr1	143415291	143415349	-	intron-Distal	3.24883	3.84589	K562	HNRNPL
chr1	143453466	143453527	-	intron-Distal	3.00947	5.06358	K562	MATR3
chr1	143414233	143414303	-	intron-Distal	3.69312	3.06617	K562	HNRNPK
chr1	143434431	143434531	-	intron-Distal	3.56218	8.11238	K562	HNRNPL
chr1	143454335	143454384	-	intron-Distal	3.33486	4.20477	K562	HNRNPL
chr1	143430677	143430739	-	intron-Distal	4.82781	7.20012	K562	ILF3
chr1	143465407	143465438	-	intron-Distal	3.14298	4.51003	HepG2	PPIG
chr1	143440461	143440500	-	intron-Distal	5.64092	58.92227	K562	HNRNPL
chr1	143450300	143450343	-	intron-Distal	3.38196	3.39827	HepG2	MATR3
chr1	143440574	143440621	-	intron-Distal	5.24800	27.41819	K562	HNRNPL
chr1	143440426	143440491	-	intron-Distal	3.36606	42.43914	K562	AGGF1
chr1	143446720	143446826	-	intron-Distal	4.00178	10.11581	K562	MATR3
chr1	143440334	143440396	-	intron-Distal	4.26338	19.74421	K562	HNRNPL
chr1	143407871	143407943	-	intron-Distal	3.47941	4.57253	K562	HNRNPK
chr1	143407500	143407552	-	intron-Distal	3.21588	3.41981	K562	HNRNPK
chr1	143447797	143447807	-	intron-Distal	3.56942	19.92064	K562	PTBP1
chr1	143451417	143451469	-	intron-Distal	3.28922	3.45912	HepG2	HNRNPC
chr1	143401979	143402119	-	intron-Distal	3.76150	8.47992	K562	EIF4G2
chr1	143452890	143452977	-	intron-Distal	4.34321	13.99305	K562	HNRNPM
chr1	143439673	143439715	-	intron-Distal	4.35019	5.01208	K562	MATR3
chr1	143425047	143425067	-	intron-Distal	4.61119	5.31171	K562	HNRNPM
chr1	143439468	143439530	-	intron-Distal	3.27757	7.21938	K562	MATR3
chr1	143449375	143449443	-	intron-Distal	3.57934	15.01538	HepG2	MATR3
chr1	143467587	143467642	-	intron-Distal,intron-Proximal	4.30301	7.59985	K562	SRSF1
chr1	143450298	143450342	-	intron-Distal	3.64922	6.30745	K562	HNRNPM
chr1	143402996	143403078	-	intron-Distal	4.10928	6.34081	K562	ILF3
chr1	143467568	143467612	-	intron-Distal,intron-Proximal	3.38548	5.58370	HepG2	PPIG
chr1	143405476	143405504	-	intron-Distal	3.18306	5.49699	K562	ILF3
chr1	143423563	143423614	-	intron-Distal	3.66477	3.72904	K562	EXOSC5
chr1	143452236	143452288	-	intron-Distal	3.03160	4.59839	K562	HNRNPM
chr1	143407761	143407820	-	intron-Distal	4.21138	3.91009	K562	HNRNPK
chr1	143402305	143402358	-	intron-Distal	3.88325	6.09351	K562	ILF3
chr1	143456099	143456163	-	intron-Distal	4.12176	6.99720	K562	MATR3
chr1	143450084	143450172	-	intron-Distal	3.75104	24.84701	K562	MATR3
chr1	143417206	143417249	-	intron-Distal	4.58101	18.47991	K562	HNRNPL
chr1	143449649	143449690	-	intron-Distal	3.46518	6.79980	HepG2	SUGP2
chr1	143447237	143447291	-	intron-Distal	3.93779	6.01105	K562	HNRNPM
chr1	143467567	143467617	-	intron-Distal,intron-Proximal	3.30181	5.04173	HepG2	NCBP2
chr1	143389542	143389694	-	intron-Distal	4.87947	5.16344	K562	SAFB2
chr1	143467588	143467640	-	intron-Distal,intron-Proximal	3.61736	7.10975	K562	UCHL5
chr1	143450695	143450742	-	intron-Distal	3.20886	4.00685	K562	TIA1
chr1	143440670	143440704	-	intron-Distal	3.70795	6.90182	HepG2	HNRNPL
chr1	143449479	143449527	-	intron-Distal	3.07116	5.09217	K562	PTBP1
chr1	143428161	143428248	-	intron-Distal	3.35319	5.03045	K562	ILF3
chr1	143414480	143414525	-	intron-Distal	3.01520	6.29928	K562	HNRNPL
chr1	143430827	143431035	-	intron-Distal	3.83085	8.85673	K562	MATR3
chr1	143403411	143403495	-	intron-Distal	4.55300	5.97952	K562	ILF3
chr1	143467547	143467573	-	intron-Distal,intron-Proximal	3.17206	3.50010	K562	AQR
chr1	143452111	143452174	-	intron-Distal	4.50852	10.29529	K562	EXOSC5
chr1	143467527	143467547	-	intron-Distal,intron-Proximal	5.11860	5.17615	K562	AQR
chr1	143405417	143405476	-	intron-Distal	4.93986	13.80143	K562	ILF3
chr1	143447807	143447841	-	intron-Distal	4.28517	46.32585	K562	PTBP1
chr1	143455735	143455766	-	intron-Distal	4.07716	3.82343	K562	HNRNPC
chr1	143429567	143429621	-	intron-Distal	5.07660	9.28059	K562	ILF3
chr1	143423556	143423615	-	intron-Distal	4.17601	12.48919	K562	HNRNPM
chr1	143401198	143401266	-	intron-Distal	3.70463	8.40597	K562	TARDBP
chr1	143417211	143417301	-	intron-Distal	4.07262	15.07047	K562	HNRNPK
chr1	143449684	143449761	-	intron-Distal	3.98554	29.91840	K562	MATR3
chr1	143449640	143449684	-	intron-Distal	4.49707	25.44299	K562	MATR3
chr1	143405414	143405526	-	intron-Distal	5.74532	23.04696	K562	HNRNPK
chr1	143423614	143423667	-	intron-Distal	4.82702	4.80399	K562	EXOSC5
chr1	143449479	143449523	-	intron-Distal	4.39903	15.59618	K562	MATR3
chr1	143423568	143423680	-	intron-Distal	3.42662	7.47778	K562	MATR3
chr1	143454367	143454437	-	intron-Distal	4.28161	4.08332	K562	NONO
chr1	143424982	143425047	-	intron-Distal	4.47689	8.29314	K562	HNRNPM
chr1	143449687	143449760	-	intron-Distal	3.27264	6.42889	HepG2	MATR3
chr1	143440650	143440674	-	intron-Distal	3.92674	12.59590	K562	HNRNPL
chr1	143449777	143449844	-	intron-Distal	4.00534	9.20320	K562	HNRNPM
chr1	143417428	143417483	-	intron-Distal	3.27635	6.05755	K562	HNRNPL
chr1	143414919	143414974	-	intron-Distal	3.66336	5.45745	K562	ILF3
chr1	143447790	143447864	-	intron-Distal	3.70401	6.44666	K562	U2AF2
chr1	143440427	143440514	-	intron-Distal	4.97689	30.71888	HepG2	HNRNPL
chr1	143422501	143422557	-	intron-Distal	4.24973	3.59909	K562	EXOSC5
chr1	143455897	143455985	-	intron-Distal	3.17815	7.14538	K562	MATR3
chr1	143411255	143411337	-	intron-Distal	4.06366	10.85555	K562	HNRNPK
chr1	143412589	143412638	-	intron-Distal	4.11431	4.07991	K562	ILF3
chr1	143452902	143452969	-	intron-Distal	5.35724	19.40702	K562	EXOSC5
chr1	143424987	143425041	-	intron-Distal	3.44425	3.43829	K562	EXOSC5
chr1	143428089	143428154	-	intron-Distal	4.31478	4.83729	K562	ILF3
chr1	143440623	143440650	-	intron-Distal	3.87813	10.83920	K562	HNRNPL
chr1	143423392	143423440	-	intron-Distal	3.66465	5.05066	K562	HNRNPM
chr1	143449388	143449448	-	intron-Distal	3.05635	24.30322	K562	MATR3
chr1	143440341	143440370	-	intron-Distal	5.45567	15.03975	K562	AGGF1
chr1	143449795	143449834	-	intron-Distal	3.45786	9.06492	HepG2	SUGP2
chr1	143411829	143411897	-	intron-Distal	4.79635	7.08021	K562	HNRNPK
chr1	143440572	143440616	-	intron-Distal	3.44501	6.91966	HepG2	HNRNPL
chr1	143440424	143440461	-	intron-Distal	5.25133	49.32419	K562	HNRNPL
chr1	143424277	143424328	-	intron-Distal	4.16299	3.62025	K562	MATR3
chr1	143444932	143445005	-	intron-Distal	5.96921	16.19652	K562	TARDBP
chr1	143417249	143417313	-	intron-Distal	3.65259	13.73109	K562	HNRNPL
chr1	143449642	143449687	-	intron-Distal	4.44856	6.29761	HepG2	MATR3
chr1	143417206	143417298	-	intron-Distal	3.07770	6.46124	K562	AGGF1
chr1	143455467	143455486	-	intron-Distal	3.46450	3.03613	K562	HNRNPC
chr1	143455415	143455463	-	intron-Distal	3.88502	3.63454	HepG2	SUGP2
chr1	143455766	143455784	-	intron-Distal	3.15097	3.44561	K562	HNRNPC
chr1	143403673	143403732	-	intron-Distal	3.45321	4.09779	K562	NONO
chr1	143423615	143423662	-	intron-Distal	3.64561	8.73570	K562	HNRNPM
chr1	143401195	143401245	-	intron-Distal	3.20599	4.24219	K562	EIF4G2
chr1	143462319	143462366	-	intron-Distal,intron-Proximal	4.12609	7.98725	K562	BUD13
chr1	143450075	143450165	-	intron-Distal	3.44432	39.03570	HepG2	SUGP2
chr1	143408338	143408422	-	intron-Distal	4.75295	6.99380	K562	KHDRBS1
chr1	143440628	143440670	-	intron-Distal	3.90427	9.46623	HepG2	HNRNPL
chr1	143401573	143401638	-	intron-Distal	3.04502	5.79572	K562	EIF4G2
chr1	143450706	143450744	-	intron-Distal	3.04617	4.82768	K562	MATR3
chr1	143449273	143449307	-	intron-Distal	3.45721	4.84410	HepG2	SUGP2
chr1	143452739	143452789	-	intron-Distal	3.93173	3.24322	HepG2	MATR3
chr1	143385740	143385825	-	intron-Distal	3.58343	4.08075	K562	SAFB2
chr1	143425199	143425287	-	intron-Distal	3.78555	5.33544	K562	MATR3
chr1	143433401	143433497	-	intron-Distal	3.25543	9.58739	K562	HNRNPK
chr1	143419915	143419998	-	intron-Distal	3.34116	5.38405	K562	ILF3
chr1	143386088	143386192	-	intron-Distal	3.09859	4.91201	K562	SAFB2
chr1	143431146	143431221	-	intron-Distal,intron-Proximal	5.26097	7.88580	K562	HNRNPM
chr1	143457400	143457458	-	intron-Distal	3.23296	3.95966	K562	FUS
chr1	143439530	143439589	-	intron-Distal	4.32928	9.82541	K562	MATR3
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for RP11-435B5.4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RP11-435B5.4 is not available on ENCORE database.
16 RBPs can affect the levels of RP11-435B5.4.

The Knockdown/knockout RNA-Seq assay for RP11-435B5.4 is not available on ENCORE database.

16 RBPs can affect the gene expression of RP11-435B5.4 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RP11-435B5.4	ENSG00000185044.10	45.08360	18.20000	1.30860	2.28570	1.74280	HepG2	EIF2S1
RP11-435B5.4	ENSG00000185044.10	43.24030	18.86440	1.19660	2.30410	1.75270	HepG2	PUM1
RP11-435B5.4	ENSG00000185044.10	32.65590	11.96490	1.44840	2.00800	1.40460	HepG2	SRSF7
RP11-435B5.4	ENSG00000185044.10	138.86520	197.32780	-0.50690	1.99320	1.43700	K562	AKAP8L
RP11-435B5.4	ENSG00000185044.10	144.33170	207.03670	-0.52050	2.40730	1.56060	K562	ATP5C1
RP11-435B5.4	ENSG00000185044.10	136.81240	188.69370	-0.46380	1.91620	1.35530	K562	DDX47
RP11-435B5.4	ENSG00000185044.10	135.63790	212.36420	-0.64680	3.03710	2.11320	K562	DKC1
RP11-435B5.4	ENSG00000185044.10	108.44590	162.02240	-0.57920	2.00070	1.31930	K562	HSPD1
RP11-435B5.4	ENSG00000185044.10	123.97130	200.46290	-0.69330	3.36600	2.14440	K562	MAK16
RP11-435B5.4	ENSG00000185044.10	121.72160	234.61060	-0.94670	5.68140	4.28940	K562	MBNL1
RP11-435B5.4	ENSG00000185044.10	296.84340	171.08860	0.79490	4.98050	3.65890	K562	PCBP2
RP11-435B5.4	ENSG00000185044.10	67.03180	139.58860	-1.05830	2.35790	1.66320	K562	PRPF8
RP11-435B5.4	ENSG00000185044.10	124.08910	190.67950	-0.61980	2.71480	2.12630	K562	RBM15
RP11-435B5.4	ENSG00000185044.10	301.74240	179.14150	0.75210	5.03490	3.86180	K562	RBM22
RP11-435B5.4	ENSG00000185044.10	273.39220	174.62330	0.64660	3.43120	1.83270	K562	RBM34
RP11-435B5.4	ENSG00000185044.10	71.99350	142.24190	-0.98240	2.05650	1.35730	K562	RPS19
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RP11-435B5.4 is not available on ENCORE database.

1 RBPs can affect the splicing of RP11-435B5.4 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP	Bound by RBP
SE	RP11-435B5.4	ENSG00000185044.10	chr1	-	143465527	143465633			143465379	143465438	143467570	143467630	0.05400	0.00816	0.06902	included	K562	AQR
A3SS	RP11-435B5.4	ENSG00000185044.10	chr1	-	143465379	143465502			143465379	143465438	143467570	143467630	0.08000	0.00030	0.00236	longer	K562	AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RP11-435B5.4

General Information

Functions

Localization

Domains (AlphaFold: RP11-435B5.4)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP11-435B5.4 is not avaliable on ENCORE database.

26 proteins are bound to RP11-435B5.4 RNA:

eCLIP assay for RP11-435B5.4 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP11-435B5.4 is not available on ENCORE database.

16 RBPs can affect the gene expression of RP11-435B5.4 :

The Knockdown/knockout RNA-Seq assay for RP11-435B5.4 is not available on ENCORE database.

1 RBPs can affect the splicing of RP11-435B5.4 :

The Knockdown/knockout RNA-Seq assay for RP11-435B5.4 is not avaliable on ENCORE database.