RP11-264B17.3

General Information

Gene Name : RP11-264B17.3
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP11-264B17.3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP11-264B17.3 is not avaliable on ENCORE database.

Proteins bound to RNA

RP11-264B17.3 RNA is bound by 11 proteins.

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eCLIP assay for RP11-264B17.3 is not avaliable on ENCORE database.

11 proteins are bound to RP11-264B17.3 RNA:

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Search:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr16	28986490	28986630	+	5'-UTR,CDS,intron-Proximal	3.42064	24.97827	HepG2	DDX3X
chr16	28986500	28986619	+	5'-UTR,CDS,intron-Proximal	5.66220	22.14311	HepG2	RPS3
chr16	28990757	28990843	+	CDS,intron-Distal,intron-Proximal	4.58421	21.19792	HepG2	PRPF8
chr16	28986402	28986482	+	5'-UTR,CDS,intron-Distal,intron-Proximal	4.01811	15.69555	HepG2	RPS3
chr16	28989510	28989615	+	intron-Distal	6.33891	14.78401	HepG2	PCBP2
chr16	28989615	28989689	+	intron-Distal	4.84910	10.86699	HepG2	PCBP2
chr16	28994221	28994287	+	CDS,intron-Distal,intron-Proximal	3.90841	9.09021	HepG2	PRPF8
chr16	28989545	28989703	+	intron-Distal	4.81611	7.23552	K562	HNRNPK
chr16	28986825	28986916	+	CDS,intron-Distal,intron-Proximal	3.29901	7.09156	HepG2	PRPF8
chr16	28986696	28986757	+	CDS,intron-Proximal	4.23347	6.81564	HepG2	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

Showing 1 to 10 of 22 entries

eCLIP assay for RP11-264B17.3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RP11-264B17.3 is not available on ENCORE database.
42 RBPs can affect the levels of RP11-264B17.3.

CanvasJS.com

The Knockdown/knockout RNA-Seq assay for RP11-264B17.3 is not available on ENCORE database.

42 RBPs can affect the gene expression of RP11-264B17.3 :

Show entries

Search:

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RP11-264B17.3	ENSG00000261067.2	472.60090	81.63750	2.53320	38.44460	36.46240	K562	AQR
RP11-264B17.3	ENSG00000261067.2	205.50960	50.71190	2.01870	16.31890	15.03900	K562	PUS1
RP11-264B17.3	ENSG00000261067.2	221.33670	60.14230	1.87970	13.41980	12.00010	HepG2	U2AF1
RP11-264B17.3	ENSG00000261067.2	148.88670	30.65430	2.28000	12.89940	11.58940	HepG2	NCBP2
RP11-264B17.3	ENSG00000261067.2	247.50560	98.72350	1.32590	10.48410	9.61840	HepG2	RBM22
RP11-264B17.3	ENSG00000261067.2	192.54620	62.45620	1.62420	9.63470	8.31870	HepG2	SF3A3
RP11-264B17.3	ENSG00000261067.2	109.60150	27.29470	2.00550	9.20980	7.91070	HepG2	PABPC4
RP11-264B17.3	ENSG00000261067.2	94.98890	28.06900	1.75870	6.36030	5.37460	HepG2	IGF2BP2
RP11-264B17.3	ENSG00000261067.2	98.29940	29.77410	1.72300	6.37240	5.34590	HepG2	FXR1
RP11-264B17.3	ENSG00000261067.2	130.48580	51.17580	1.35030	6.20280	5.19690	K562	AKAP8L
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

Showing 1 to 10 of 45 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RP11-264B17.3 is not available on ENCORE database.

5 RBPs can affect the splicing of RP11-264B17.3 :

Show entries

Search:

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
RI	RP11-264B17.3	ENSG00000261067.2	chr16	+	28992790	28993866			28992790	28992936	28993676	28993866	0.61000	0.00001	0.00032	included	HepG2	HNRNPK
A5SS	RP11-264B17.3	ENSG00000261067.2	chr16	+	28992790	28993866			28992790	28992936	28994177	28994243	-0.07000	0.00048	0.04477	shorter	HepG2	U2AF1
RI	RP11-264B17.3	ENSG00000261067.2	chr16	+	28992790	28993866			28992790	28992936	28993676	28993866	0.36100	0.00245	0.03998	included	HepG2	G3BP1
MXE	RP11-264B17.3	ENSG00000261067.2	chr16	+	28990580	28990792	28992790	28993866	28989228	28989365	28994177	28994243	0.05400	0.00540	0.03834	1included	K562	AQR
RI	RP11-264B17.3	ENSG00000261067.2	chr16	+	28992790	28993866			28992790	28992936	28993676	28993866	0.31500	0.00605	0.04100	included	HepG2	SF3B4

Showing 1 to 5 of 5 entries

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RP11-264B17.3

General Information

Functions

Localization

Domains (AlphaFold: RP11-264B17.3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP11-264B17.3 is not avaliable on ENCORE database.

11 proteins are bound to RP11-264B17.3 RNA:

eCLIP assay for RP11-264B17.3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP11-264B17.3 is not available on ENCORE database.

42 RBPs can affect the gene expression of RP11-264B17.3 :

The Knockdown/knockout RNA-Seq assay for RP11-264B17.3 is not available on ENCORE database.

5 RBPs can affect the splicing of RP11-264B17.3 :

The Knockdown/knockout RNA-Seq assay for RP11-264B17.3 is not avaliable on ENCORE database.