RP11-264B17.3

General Information

Gene Name : RP11-264B17.3
Gene ID :
Essential Gene : No

Functions

Not Available

Localization

Not Available

Domains (AlphaFold: RP11-264B17.3)

Not Available

Antibody Validation

Not Avaiable

Expression Level in Cell lines

Cell Line	Gene Name	Ensembl ID	Rep1 TPM	Rep2 TPM	Average TPM	Experiment ID

Assays

0 Released experiments are available on ENCORE database.

eCLIP

No eCLIP experiment available

Antibody Validation

No Antibody Primary Validation image or Secondary image available

KD RNA-Seq

No KD RNA-Seq experiment available

RNA Bind-n-Seqn

No RBNS experiment available

Localization Image in HepG2

No Localization Information available

RBP	Antibody Info	Primary-HepG2	Secondary-HepG2	Primary-K562	Secondary-K562	Primary-UBERON	Primary-Hela

Summary
Proteins Bound to RBP RNA

RNA Targets

eCLIP assay for RP11-264B17.3 is not avaliable on ENCORE database.

Proteins bound to RNA

RP11-264B17.3 RNA is bound by 11 proteins.

eCLIP assay for RP11-264B17.3 is not avaliable on ENCORE database.

11 proteins are bound to RP11-264B17.3 RNA:

Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name
chr16	28989940	28989985	+	intron-Distal	4.25432	3.55787	K562	PTBP1
chr16	28989545	28989703	+	intron-Distal	4.81611	7.23552	K562	HNRNPK
chr16	28989615	28989689	+	intron-Distal	4.84910	10.86699	HepG2	PCBP2
chr16	28989558	28989613	+	intron-Distal	4.29313	3.89149	HepG2	HNRNPK
chr16	28989572	28989639	+	intron-Distal	4.95294	5.11777	HepG2	DDX59
chr16	28989662	28989734	+	intron-Distal	3.85487	3.28841	HepG2	PTBP1
chr16	28989510	28989615	+	intron-Distal	6.33891	14.78401	HepG2	PCBP2
chr16	28998572	28998655	+	intron-Distal	4.74330	5.05386	K562	PTBP1
chr16	28991664	28991748	+	intron-Distal	3.37567	4.14989	HepG2	ILF3
chr16	28986825	28986916	+	CDS,intron-Distal,intron-Proximal	3.29901	7.09156	HepG2	PRPF8
chr16	28992724	28992814	+	CDS,intron-Distal,intron-Proximal	4.77465	5.86025	HepG2	SF3B4
chr16	28986402	28986482	+	5'-UTR,CDS,intron-Distal,intron-Proximal	4.01811	15.69555	HepG2	RPS3
chr16	28998116	28998202	+	5'-UTR,CDS,intron-Proximal	5.30448	5.74423	HepG2	BUD13
chr16	29001116	29001161	+	3'-UTR,CDS,intron-Proximal	4.96077	6.16445	HepG2	PPIG
chr16	28994624	28994683	+	intron-Distal,intron-Proximal	4.64851	5.93128	HepG2	PRPF8
chr16	28990757	28990843	+	CDS,intron-Distal,intron-Proximal	4.58421	21.19792	HepG2	PRPF8
chr16	28994221	28994287	+	CDS,intron-Distal,intron-Proximal	3.90841	9.09021	HepG2	PRPF8
chr16	28989345	28989381	+	CDS,intron-Distal,intron-Proximal	4.35496	3.49332	HepG2	PPIG
chr16	28986500	28986619	+	5'-UTR,CDS,intron-Proximal	5.66220	22.14311	HepG2	RPS3
chr16	28993849	28993927	+	CDS,intron-Distal,intron-Proximal	3.99204	5.90868	HepG2	PRPF8
chr16	28986490	28986630	+	5'-UTR,CDS,intron-Proximal	3.42064	24.97827	HepG2	DDX3X
chr16	28986696	28986757	+	CDS,intron-Proximal	4.23347	6.81564	HepG2	PRPF8
Chr	Start	End	Strand	Matched Area	log2(fold change)	-log(p-value)	Cell Line	Binding Protein Name

eCLIP assay for RP11-264B17.3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout assay for RP11-264B17.3 is not available on ENCORE database.
42 RBPs can affect the levels of RP11-264B17.3.

The Knockdown/knockout RNA-Seq assay for RP11-264B17.3 is not available on ENCORE database.

42 RBPs can affect the gene expression of RP11-264B17.3 :

Gene Name	Gene ID	KDMean	CNMean	log2(fold change) *	-log(pval) **	-log(padj) **	Cell Line	Affected by RBP	Bound by RBP
RP11-264B17.3	ENSG00000261067.2	123.27280	63.22000	0.96330	2.79750	1.85440	HepG2	BCCIP
RP11-264B17.3	ENSG00000261067.2	93.55600	32.33010	1.53290	5.00020	4.18060	HepG2	DDX3X
RP11-264B17.3	ENSG00000261067.2	80.76340	26.69790	1.59690	3.77400	3.08840	HepG2	EIF2S1
RP11-264B17.3	ENSG00000261067.2	82.69240	29.50160	1.48690	4.65520	3.82870	HepG2	EIF4A3
RP11-264B17.3	ENSG00000261067.2	172.50760	118.12140	0.54630	1.88600	1.36950	HepG2	ETF1
RP11-264B17.3	ENSG00000261067.2	98.29940	29.77410	1.72300	6.37240	5.34590	HepG2	FXR1
RP11-264B17.3	ENSG00000261067.2	78.82060	27.61550	1.51300	4.68540	3.83050	HepG2	G3BP1
RP11-264B17.3	ENSG00000261067.2	61.74540	29.32300	1.07420	2.28250	1.47760	HepG2	G3BP2
RP11-264B17.3	ENSG00000261067.2	70.20450	30.88960	1.18430	2.81120	1.78320	HepG2	GNB2L1
RP11-264B17.3	ENSG00000261067.2	73.40000	32.31640	1.18340	2.99340	1.83550	HepG2	GRSF1
RP11-264B17.3	ENSG00000261067.2	82.27680	27.97330	1.55630	4.63040	3.74580	HepG2	HNRNPK
RP11-264B17.3	ENSG00000261067.2	94.98890	28.06900	1.75870	6.36030	5.37460	HepG2	IGF2BP2
RP11-264B17.3	ENSG00000261067.2	72.87800	32.14450	1.18080	2.88620	2.03800	HepG2	LARP4
RP11-264B17.3	ENSG00000261067.2	75.83650	31.77100	1.25510	3.14730	1.85030	HepG2	LIN28B
RP11-264B17.3	ENSG00000261067.2	82.58240	29.78450	1.47120	4.47440	3.64400	HepG2	MAGOH
RP11-264B17.3	ENSG00000261067.2	73.74630	29.94990	1.29990	3.14370	2.47410	HepG2	MATR3
RP11-264B17.3	ENSG00000261067.2	148.88670	30.65430	2.28000	12.89940	11.58940	HepG2	NCBP2
RP11-264B17.3	ENSG00000261067.2	109.60150	27.29470	2.00550	9.20980	7.91070	HepG2	PABPC4
RP11-264B17.3	ENSG00000261067.2	71.76490	40.68990	0.81850	1.89240	1.37400	HepG2	PCBP1
RP11-264B17.3	ENSG00000261067.2	85.96540	47.96870	0.84160	2.11230	1.40210	HepG2	PRPF8
RP11-264B17.3	ENSG00000261067.2	247.50560	98.72350	1.32590	10.48410	9.61840	HepG2	RBM22
RP11-264B17.3	ENSG00000261067.2	88.11340	36.50970	1.27100	2.20060	1.32560	HepG2	RBM27
RP11-264B17.3	ENSG00000261067.2	192.54620	62.45620	1.62420	9.63470	8.31870	HepG2	SF3A3
RP11-264B17.3	ENSG00000261067.2	105.44770	43.11120	1.29030	4.64710	3.91080	HepG2	SF3B4
RP11-264B17.3	ENSG00000261067.2	131.32750	64.96120	1.01540	4.79480	4.00800	HepG2	SRSF5
RP11-264B17.3	ENSG00000261067.2	69.00420	36.60100	0.91470	2.27350	1.76310	HepG2	SRSF9
RP11-264B17.3	ENSG00000261067.2	94.49190	40.25010	1.23110	4.49040	3.88540	HepG2	TIAL1
RP11-264B17.3	ENSG00000261067.2	221.33670	60.14230	1.87970	13.41980	12.00010	HepG2	U2AF1
RP11-264B17.3	ENSG00000261067.2	99.94080	29.71420	1.74980	3.61040	2.48000	HepG2	U2AF2
RP11-264B17.3	ENSG00000261067.2	76.89310	36.55870	1.07250	3.24350	2.42270	HepG2	UCHL5
RP11-264B17.3	ENSG00000261067.2	130.48580	51.17580	1.35030	6.20280	5.19690	K562	AKAP8L
RP11-264B17.3	ENSG00000261067.2	472.60090	81.63750	2.53320	38.44460	36.46240	K562	AQR
RP11-264B17.3	ENSG00000261067.2	91.17760	33.77590	1.43260	4.84210	3.61870	K562	EFTUD2
RP11-264B17.3	ENSG00000261067.2	72.59590	36.17420	1.00480	2.41910	1.45860	K562	EIF3D
RP11-264B17.3	ENSG00000261067.2	115.24570	42.63340	1.43460	5.72520	4.29340	K562	NAA15
RP11-264B17.3	ENSG00000261067.2	95.81890	23.99910	1.99720	4.83760	3.42370	K562	PABPN1
RP11-264B17.3	ENSG00000261067.2	67.86140	32.68530	1.05390	2.42210	1.50940	K562	PCBP2
RP11-264B17.3	ENSG00000261067.2	103.30330	32.86750	1.65210	2.54330	1.82430	K562	PRPF8
RP11-264B17.3	ENSG00000261067.2	205.50960	50.71190	2.01870	16.31890	15.03900	K562	PUS1
RP11-264B17.3	ENSG00000261067.2	104.15480	49.44460	1.07470	2.73010	2.14030	K562	RBM15
RP11-264B17.3	ENSG00000261067.2	68.88330	34.20900	1.00970	2.66920	1.84420	K562	RBM22
RP11-264B17.3	ENSG00000261067.2	86.51000	21.94590	1.97880	4.87810	3.13310	K562	SF1
RP11-264B17.3	ENSG00000261067.2	66.03090	21.05590	1.64880	5.20330	4.00930	K562	SF3B4
RP11-264B17.3	ENSG00000261067.2	75.10050	25.20650	1.57490	2.63870	1.45010	K562	SNRNP200
RP11-264B17.3	ENSG00000261067.2	76.68380	35.41790	1.11430	3.25510	2.48730	K562	TARDBP
Gene Name	Gene ID	KDMean	CNMean	log2(fold change)	-log(pval)	-log(padj)	Cell Line	Affected by RBP	Bound by RBP

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

The Knockdown/knockout RNA-Seq assay for RP11-264B17.3 is not available on ENCORE database.

5 RBPs can affect the splicing of RP11-264B17.3 :

Event Type	Gene Name	Gene ID	chr	Strand	ExonStart	ExonEnd	2ndExonStart	2ndExonEnd	upstreamES	upstreamEE	downstreamES	downstreamEE	dPSI	p-value	FDR	is_included	Cell Line	Affected by RBP
A5SS	RP11-264B17.3	ENSG00000261067.2	chr16	+	28992790	28993866			28992790	28992936	28994177	28994243	-0.07000	0.00048	0.04477	shorter	HepG2	U2AF1
RI	RP11-264B17.3	ENSG00000261067.2	chr16	+	28992790	28993866			28992790	28992936	28993676	28993866	0.36100	0.00245	0.03998	included	HepG2	G3BP1
RI	RP11-264B17.3	ENSG00000261067.2	chr16	+	28992790	28993866			28992790	28992936	28993676	28993866	0.31500	0.00605	0.04100	included	HepG2	SF3B4
RI	RP11-264B17.3	ENSG00000261067.2	chr16	+	28992790	28993866			28992790	28992936	28993676	28993866	0.61000	0.00001	0.00032	included	HepG2	HNRNPK
MXE	RP11-264B17.3	ENSG00000261067.2	chr16	+	28990580	28990792	28992790	28993866	28989228	28989365	28994177	28994243	0.05400	0.00540	0.03834	1included	K562	AQR

*: "Inf" was shown as "99999.99999" and "-Inf" was shown as "-99999.99999".
**: "-log(0)" was displayed as "99999.99999".

RP11-264B17.3

General Information

Functions

Localization

Domains (AlphaFold: RP11-264B17.3)

Antibody Validation

Expression Level in Cell lines

Assays

RNA Targets

Proteins bound to RNA

eCLIP assay for RP11-264B17.3 is not avaliable on ENCORE database.

11 proteins are bound to RP11-264B17.3 RNA:

eCLIP assay for RP11-264B17.3 is not avaliable on ENCORE database.

Diffrential Expression

The Knockdown/knockout RNA-Seq assay for RP11-264B17.3 is not available on ENCORE database.

42 RBPs can affect the gene expression of RP11-264B17.3 :

The Knockdown/knockout RNA-Seq assay for RP11-264B17.3 is not available on ENCORE database.

5 RBPs can affect the splicing of RP11-264B17.3 :

The Knockdown/knockout RNA-Seq assay for RP11-264B17.3 is not avaliable on ENCORE database.